Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0467 ATGACTAAGAGATCAAAGAAATCAGAGTCAAATAGGAGAGGAAAAAGAAGAAAGTCATCAGGTGGTTTTTCACCGTTGGATGCATCTTCTTCCAGTGTTGTGTTCCGTTTGCTATGTCCTGCTACTAGAATTGGTGGTGTTATTGGTAAAGGCGGTTCGATTATTTCACAAATTCGACAAGAAACTGGCGTGAAGGTTAAGATTGAAGAGCCCGTGCTGGGTTGCGAAGAAAGAGTTATAACTTTTTTAAGTTCTGATAAGGAGACCGAAGAAGGTAATGCCGAGCCAGGAAAGGAGGTTAATAATAATAATAATGATAATAATAATAATAATAATAATGATGATGAGAGTGAAAACAAGGGGAAGGATGATGAGGGGAAAGATAATGGGGATGATAATGAAGATAAAGATTCTGTTTCTGTTGAAGATTCGCAGAGCGAGAAGGGGAGTTCGAATTTGACTATTCTGAAGGCTGTGACACTAGTTTATGAGAAGATGGTGGAAGGAATAGAGGATATAGGGGAAGGTGGTGATGAAAGTAAAAAAGCTTCATACTTTACTTTAAGGCTGCTTGTGCTTTCAAATCAAGTTGGATGCATTTTGGGAAAGGGTGGAAGCGTGATAAAGAGGATGTCAGCGGATAGCGGGGCACAGATTCGGATCCTTCCCAAAGAAGAAATTCCCACGTGTGCGACGGATTCTGATGAGCTAGTTCAGATCACAGGAGGAGTAGAAGTTGTCAAGAAAGCTCTTCAGTCTGTTTTTCAGCAGCTTTTGGATAATCCATCTCGTGATCATGAATCTCTCTCCACGAACCTTACTGGGCCGTCGTCTCATTCTCATTCCTTTGGTCAATTCTCACAAAACAAACGAACTTTTGCTGGTCAAGGAGCACCTTTTGCTACCGGGCCTAATGAAATTCCTGTTTTCCATTCTGCTCCAATGATTCCCAAGTTTCATGAAGGCCCCATCCGTGGTCGCATGAGGCTTCCACCGGAAATACTTACTTTCCGTTTATTGTGTCCTTCCGAAAATGTAGGAAACTTAATTGGCAAAGGTGGATCAATAATTAAGACCATGCAGCAAGAAACAGCTAGTGAAATCAAGGTTATAGAAGGCAATCTGGGTTCAGAGGATTGCATTGTCGTCATATCTGGTCCAGCGCACCCAGATGATAGAATATCACCTGTGCAAGAGGCTATATTTCGTGTGCAAAATAGAATATCCAGGGCTATTCCTGATGCCAAAGCGCAAAGTATGTTAGCAAGGATCATTGTTTCTTCCAATCATATAGGCTGTCTCCTTGGGAAGGGTGGTTCCATTATTGCTGAAATGAGGAATTTATCAGGTGCCCATATTCGTATGTTGGGAAAGGATAAGGGTCCAAAGTGTGTTTCAGAAGATGATGAAGTAATCCAGGTAAGTGGAGAAATCGAGGCAGTGCATGATGCTCTTTTGCAAATAACAACAAGATTAAGAAATCATTACTTTCGAGATGCATTTCCGTCTGCTGATTTTCCTTCAAATTCTGGATTTCTGGATCAACATTCTTCATTCCCACCTTATTTGGGAAGGCGGGGACTTTCACCTCCCAGAATGTATTCTGACCTAGGTCCGCCACCTCCACATGCTGGTTTTCCCCTCGATGATCACCCTCATTTTATGAATAATATGTATAGACCAGGCATTCCTCCTCACATATCCGAAAGGAAGCCTTGGGGTCCTAAGGGACTACTTGAAGGTGGTGGACACATGGGCTTGCCAGAATTTGCAGGGGGTCCTCGAAGAATTTCTGGATTTGCAGGAGGAAGCCTACCAATTATCACCAGTACCACTGTTGAAGTTGTTGTTCCCCGAGGTCTGGTGCCTGTAATATATGGAGAAGATGGTGAATGCCTGAAACAAATACTCCAGATATCTGATGCAAATGTTACTATTACTGATCCAAAACCTGGAGCCGCGGAAACTAAAATTATAATATCTGGAACCCCGGAGCAAACTAATGCTGCACAAAGTCTTATTCAGGCATTTGTCATGATTGAGGGGGAGTCTGGTTGA 2058 0.4252 MTKRSKKSESNRRGKRRKSSGGFSPLDASSSSVVFRLLCPATRIGGVIGKGGSIISQIRQETGVKVKIEEPVLGCEERVITFLSSDKETEEGNAEPGKEVNNNNNDNNNNNNNDDESENKGKDDEGKDNGDDNEDKDSVSVEDSQSEKGSSNLTILKAVTLVYEKMVEGIEDIGEGGDESKKASYFTLRLLVLSNQVGCILGKGGSVIKRMSADSGAQIRILPKEEIPTCATDSDELVQITGGVEVVKKALQSVFQQLLDNPSRDHESLSTNLTGPSSHSHSFGQFSQNKRTFAGQGAPFATGPNEIPVFHSAPMIPKFHEGPIRGRMRLPPEILTFRLLCPSENVGNLIGKGGSIIKTMQQETASEIKVIEGNLGSEDCIVVISGPAHPDDRISPVQEAIFRVQNRISRAIPDAKAQSMLARIIVSSNHIGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGEIEAVHDALLQITTRLRNHYFRDAFPSADFPSNSGFLDQHSSFPPYLGRRGLSPPRMYSDLGPPPPHAGFPLDDHPHFMNNMYRPGIPPHISERKPWGPKGLLEGGGHMGLPEFAGGPRRISGFAGGSLPIITSTTVEVVVPRGLVPVIYGEDGECLKQILQISDANVTITDPKPGAAETKIIISGTPEQTNAAQSLIQAFVMIEGESG* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0467 685 Gene3D K Homology domain, type 1 609 680 IPR036612 GO:0003723
Psa5g0467 685 MobiDBLite consensus disorder prediction 84 149 - -
Psa5g0467 685 Gene3D K Homology domain, type 1 416 496 IPR036612 GO:0003723
Psa5g0467 685 Gene3D K Homology domain, type 1 182 263 IPR036612 GO:0003723
Psa5g0467 685 MobiDBLite consensus disorder prediction 113 143 - -
Psa5g0467 685 ProSiteProfiles Type-1 KH domain profile. 32 96 - -
Psa5g0467 685 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 5 547 - -
Psa5g0467 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 417 499 IPR036612 GO:0003723
Psa5g0467 685 Gene3D K Homology domain, type 1 333 411 IPR036612 GO:0003723
Psa5g0467 685 Gene3D K Homology domain, type 1 29 94 IPR036612 GO:0003723
Psa5g0467 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 174 262 IPR036612 GO:0003723
Psa5g0467 685 CDD PCBP_like_KH 423 489 - -
Psa5g0467 685 CDD PCBP_like_KH 187 255 - -
Psa5g0467 685 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 5 547 - -
Psa5g0467 685 ProSiteProfiles Type-1 KH domain profile. 419 488 - -
Psa5g0467 685 ProSiteProfiles Type-1 KH domain profile. 610 674 - -
Psa5g0467 685 ProSiteProfiles Type-1 KH domain profile. 185 254 - -
Psa5g0467 685 CDD PCBP_like_KH 336 405 - -
Psa5g0467 685 CDD KH-I 612 675 - -
Psa5g0467 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 611 678 IPR036612 GO:0003723
Psa5g0467 685 MobiDBLite consensus disorder prediction 96 112 - -
Psa5g0467 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 27 84 IPR036612 GO:0003723
Psa5g0467 685 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g0467 685 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Psa5g0467 685 Pfam KH domain 187 252 IPR004088 GO:0003723
Psa5g0467 685 Pfam KH domain 336 388 IPR004088 GO:0003723
Psa5g0467 685 Pfam KH domain 612 675 IPR004088 GO:0003723
Psa5g0467 685 Pfam KH domain 35 82 IPR004088 GO:0003723
Psa5g0467 685 Pfam KH domain 423 488 IPR004088 GO:0003723
Psa5g0467 685 SMART kh_6 609 679 IPR004087 GO:0003676
Psa5g0467 685 SMART kh_6 333 409 IPR004087 GO:0003676
Psa5g0467 685 SMART kh_6 184 259 IPR004087 GO:0003676
Psa5g0467 685 SMART kh_6 418 493 IPR004087 GO:0003676
Psa5g0467 685 SMART kh_6 31 167 IPR004087 GO:0003676
Psa5g0467 685 CDD PCBP_like_KH 34 81 - -
Psa5g0467 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 335 410 IPR036612 GO:0003723
Psa5g0467 685 MobiDBLite consensus disorder prediction 265 284 - -
Psa5g0467 685 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0467 Psa-Chr5 37324379 37329078 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0467 K21444 - gmx:100777433 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0467 5 37324379 37329078 Psa5g0467 5 37324379 37329078 ECH