Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0448 ATGTTTCAGCCAAAACTCATGGCCCTTTTCACTACCTCAAAATCATCTCCATTTCTCATTCTTCTAATACTTCTACTAGGTAATATAGCTTCAGGGACTGTGTTTACCATAGAAAACCGTTGCAGCAACACTATCTGGCCGGGAACACTTTCCGGAAACGGCGCTGCAATTCTCGGAGACGGGGGATTTTCACTTCCGCCGGGATCGTCTCTTCAGTTCACTGCTCCGTCGGGTTGGTCAGGCCGATTTTGGGGTAGAACCGGCTGCAACTTTGACAGTGTGGGTAACGGGAATTGCATCACCGGAGACTGCGCCGGAGGGTTAAAGTGTAACGGTGGAGGTGCTCCTCCGGTGACTCTGGCGGAGTTTACTATCGGAAACAGGAATGAAGATAAGGATTTCTACGACGTGAGTCTGGTGGATGGTTACAATATCGGGATTGGGATACATGCAACCGGAGGAACAGGTGACTGTCAGTATGCGGGCTGTGTTGCGGATTTGAACGGTCACTGTCCGGCGGAGTTGCAGGTAACCGAGGAAGGAGGTTCTGTGGTGGCGTGTAAGAGCGCGTGTGCGGCGTTTAATACGGAGGAGTTTTGTTGCACCGGCGAGCATTCGAGTCCGCAGAGCTGTACTCCGACGCAATACTCTGAGATGTTTAAGAATGCATGTCCCTCTGCGTACAGTTATGCTTACGATGATGCTTCAAGCACTTGTACATGTTCTGGATCAGATTATCATATCACGTTCTGTCCAACTGCTTCATCTTAG 771 0.5006 MFQPKLMALFTTSKSSPFLILLILLLGNIASGTVFTIENRCSNTIWPGTLSGNGAAILGDGGFSLPPGSSLQFTAPSGWSGRFWGRTGCNFDSVGNGNCITGDCAGGLKCNGGGAPPVTLAEFTIGNRNEDKDFYDVSLVDGYNIGIGIHATGGTGDCQYAGCVADLNGHCPAELQVTEEGGSVVACKSACAAFNTEEFCCTGEHSSPQSCTPTQYSEMFKNACPSAYSYAYDDASSTCTCSGSDYHITFCPTASS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0448 256 PANTHER OS03G0233200 PROTEIN 29 252 IPR001938 -
Psa5g0448 256 SMART tha2 35 252 IPR001938 -
Psa5g0448 256 ProSiteProfiles Thaumatin family profile. 32 254 IPR001938 -
Psa5g0448 256 PIRSF PR5 2 256 IPR001938 -
Psa5g0448 256 SUPERFAMILY Osmotin, thaumatin-like protein 34 252 IPR037176 -
Psa5g0448 256 Pfam Thaumatin family 39 252 IPR001938 -
Psa5g0448 256 Gene3D Thaumatin 33 252 IPR037176 -
Psa5g0448 256 PRINTS Pathogenesis-related protein signature 34 46 IPR001938 -
Psa5g0448 256 PRINTS Pathogenesis-related protein signature 82 93 IPR001938 -
Psa5g0448 256 PRINTS Pathogenesis-related protein signature 95 124 IPR001938 -
Psa5g0448 256 PRINTS Pathogenesis-related protein signature 133 149 IPR001938 -
Psa5g0448 256 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Psa5g0448 256 CDD TLP-PA 34 251 - -
Psa5g0448 256 PANTHER PATHOGENESIS-RELATED PROTEIN 5 29 252 - -
Psa5g0448 256 ProSitePatterns Thaumatin family signature. 95 110 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0448 Psa-Chr5 36384557 36386012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0448 19 252 Receptor kinase-like Gene Family AT5G38280 46.531 1.49e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0448 - - gmx:100809378 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0448 5 36384557 36386012 Psa5g0448 5 36384557 36386012 ECH