Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0420 ATGGCCGTTTCAACCACTTTCTCCGCTCCCAAATTCGACTCTCTTTTCCTCAAATCTTCTTCCTCTCCCTCTTCTTCTTCAAGGCCATCATCACCGTCCATTCCCATCCATTTATCACTTCTCGGAAAACCTAGAACCACCTTCATTCATAAAGGAATTATTCGTTGTGATGCTCAAAATTCTGTTCAAAATAATGGCACCAGTAGCTCCCTCTCTCCTCTTGAGCTCCTCAAAACTTCTTCAGCTGATAGGTATACAAAGGAAAGGAGCAGCATTGTTGTCATTGGGCTCAGTGTGCACACTGCTCCGGTGGAAATGCGTGAAAAACTTGCCATACCGGAAGCAGAATGGCCTAGAGCTATTGCAGAGCTGTGCAATCTCAATCATATTGAAGAAGCAGCTGTTCTGAGTACATGTAACCGAATGGAGATATATGTTGTTGCTCTATCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAAACAAGTTCCGTTCCTGTTTCAGAGCTTTGTGAGCACCGGTTTTTACTTTACAACAGAGATGCCACACAACATATTTTTCAAGTATCAGCGGGTCTTGAGTCTCTTGTTTTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGGGCAAGGAGTTAATGGATTTGGAAGAAACATTAGTGGTCTATTCAAGCATGCAATAACTGTTGGAAAAAGGGTTAGAGCCGAGACTAATATTGCTGCTGGGGCAGTTTCTGTGAGCTCAGCTGCTGTTGAGTTGGCCTACATGAAGCTACCTGGATCCTCTCATGATAATGCGAGAATGCTGGTTATCGGTGCTGGGAAGATGGGAAAGCTAGTGATCAAACATTTGGCTTCAAAAGGTTGCCCAAGTGTGGTTGTTGTCAATAGAACTGAGGAAAGAGTTGCAGCAATACGTGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCTTGTGCCGGTGAAGCAGATGTAGTATTCACCAGTACAGCATCAGAAACCCCATTATTCATGAAAGACGACGTCAAGGACTTTCCTCCAGCAAGTCAAATTGTTGGAGGCCATCGCCTTTTCATTGACATTTCTGTTCCTCGGAATGTTGGTTCATGTGTCTCGGAGGTTGAATCTGTGCGACTTTACAATGTTGACGACCTTAAAGAGGTTGTGGCTGCAAACAAAGAGGACCGGCAAAGAAAAGCAATGGAAGCACAGGTGATCATTACTGAAGAGTTAAACCAATTTGAAGCTTGGAGGGACTCACTGGAAACTGTTCCCACCATTAAAAAACTGAGGGCCTATGCTGAAAGGATCAGAGTTGCTGAGCTTGAAAAATGCTTGGGTAAGATGGGAGATGATATCTCAAAGAAGACGCGGAAAGCTGTGGATGATCTGAGTCGGGGTATTGTGAACAGGATGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAGTGACGACCGGACTCTAACTGAGACCCTTGAAAACATGCATGCTTTGAACAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAAAAGGTTCGAGCAAAGGTGGAACAAAACCAGAAGTGA 1623 0.4387 MAVSTTFSAPKFDSLFLKSSSSPSSSSRPSSPSIPIHLSLLGKPRTTFIHKGIIRCDAQNSVQNNGTSSSLSPLELLKTSSADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCEHRFLLYNRDATQHIFQVSAGLESLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAYMKLPGSSHDNARMLVIGAGKMGKLVIKHLASKGCPSVVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCAGEADVVFTSTASETPLFMKDDVKDFPPASQIVGGHRLFIDISVPRNVGSCVSEVESVRLYNVDDLKEVVAANKEDRQRKAMEAQVIITEELNQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRMLHGPMQHLRCDGSDDRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNQK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0420 540 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 416 520 IPR015896 GO:0008883|GO:0033014|GO:0050661
Psa5g0420 540 Gene3D - 251 403 - -
Psa5g0420 540 Coils Coil 303 323 - -
Psa5g0420 540 CDD NAD_bind_Glutamyl_tRNA_reduct 92 414 - -
Psa5g0420 540 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 250 411 IPR036291 -
Psa5g0420 540 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 414 503 IPR036453 GO:0008883|GO:0033014|GO:0050661
Psa5g0420 540 PANTHER GLUTAMYL-TRNA REDUCTASE 1 540 - -
Psa5g0420 540 Hamap Glutamyl-tRNA reductase [hemA]. 91 518 IPR000343 GO:0008883|GO:0033014|GO:0050661
Psa5g0420 540 TIGRFAM hemA: glutamyl-tRNA reductase 92 502 IPR000343 GO:0008883|GO:0033014|GO:0050661
Psa5g0420 540 Pfam Shikimate / quinate 5-dehydrogenase 261 402 IPR006151 -
Psa5g0420 540 ProSitePatterns Glutamyl-tRNA reductase signature. 188 211 IPR018214 GO:0008883
Psa5g0420 540 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 95 245 IPR015895 GO:0008883|GO:0033014|GO:0050661
Psa5g0420 540 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 540 - -
Psa5g0420 540 Coils Coil 524 540 - -
Psa5g0420 540 Gene3D - 90 250 IPR036343 GO:0008883|GO:0033014|GO:0050661
Psa5g0420 540 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 91 247 IPR036343 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0420 Psa-Chr5 34476439 34480077 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0420 K02492 - gmx:100782247 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0420 5 34476439 34480077 Psa5g0420 5 34476439 34480077 ECH