Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0393 ATGGGAACCCTTGGAAGAGCCATATACACCGTCGGGTCATGGATTCGAGGAACCGGACAGGCCATTGATCGCCTCGGTTCCCGCTTCCACGGCGGCTATCACATCGAAGAACAGCTGTCTAGACATAGAACTCTGCTGAACATATTTGACAAGGCTCCTGTTCTTGATAAGGATGTGTTTGTTGCACCGAGTGCCGCCGTTATTGGAGATGTGCAGATTGGAAAGGGGTCGTCGATTTGGTATGGATCTGTATTGAGAGGTGATGTTAACCGCATCAGAGTTGGAAGTGGAACTAACATACAGGATAACTCCCTGGTGCATGTTGCAAAGTCAAACCTAAGTGGGAAGGTGTTGCCTACTATAATCGGGGATAATGTTACCGTAGGTCATAGTGCTGTTTTACATGGATGTACTGTTGAGGATGAGGCTTTTGTTGGTATGGGTGCAATTCTACTCGATGGAGTAGTTGTTGAGAAAAATGCCATGGTTGCTGCTGGAGCCCTTGTGAGGCAGAATACAAAGGTTCCATCTGGCGAGGTTTGGGCAGGCAATCCAGCTAAGTTTCTGAGAAAGCTCACTGATGAAGAGATAGCTTTTATCTCCCAGTCAGCCACCAATTATACTAACCTTGCACAGGTCCATGCAGCTGAAAATTCGAAGTCCTACGATGAAATTGCATTTGAGAAGGTGCTGCGTAAGAAGTATGCAACGAAAGATGAGGAATATGACTCTATGTTGGGTGTTGTTCGTGAGATCCCACCAGAACTTATTCTTCCTGATAATATCTTGCCTGATAAAGCAAACAAAGCTCTTCAAAATTGA 822 0.4562 MGTLGRAIYTVGSWIRGTGQAIDRLGSRFHGGYHIEEQLSRHRTLLNIFDKAPVLDKDVFVAPSAAVIGDVQIGKGSSIWYGSVLRGDVNRIRVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGAILLDGVVVEKNAMVAAGALVRQNTKVPSGEVWAGNPAKFLRKLTDEEIAFISQSATNYTNLAQVHAAENSKSYDEIAFEKVLRKKYATKDEEYDSMLGVVREIPPELILPDNILPDKANKALQN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0393 273 CDD LbH_gamma_CA_like 54 212 - -
Psa5g0393 273 Gene3D Hexapeptide repeat proteins 44 223 - -
Psa5g0393 273 PANTHER EXPRESSED PROTEIN 1 270 - -
Psa5g0393 273 PANTHER DYNACTIN SUBUNIT P25 1 270 - -
Psa5g0393 273 Pfam Hexapeptide repeat of succinyl-transferase 119 151 IPR001451 -
Psa5g0393 273 SUPERFAMILY Trimeric LpxA-like enzymes 47 213 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0393 Psa-Chr5 31103537 31107659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0393 121 196 Miscellaneous Gene Families AT2G17640 34.118 6.89e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0393 K01726 - gmx:100777972 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0393 5 31103537 31107659 Psa5g0393 5 31103537 31107659 ECH