Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0391 ATGTCGATGATATTTGCAAAGCCATCCATGAGAACAAGGGTTTCATTTGAGACTGGTTTTTCATTGTTAGGTGGTCATGCTATTTACTTAGGACCCAATGACATTCAAATGGGGAAGCGAGAGGAGACTCGTGATGTTGCTCGAGTTTTGTCTCGCTATAACGATATCATTATGGCCCGTGTTTTTTCTCATCAGGACATACTTGATCTTGCAAAGTATGCGAGTGTCCCTGTCATCAATGGTTTGACAGACTACAACCATCCCGTCCAGATAATGGCTGATGCCCTTACTATGATTGAGCACATTGGTCGGTTTGAAGGAACCAAGGTTGTCTATGTTGGAGATGGGAATAATATTGTCCACTCATGGTTGTTGTTGGCAGCTGTAGTTCCTTTTCACTTTGTTTGTGCGTGTCCAAAAGGTTTTGAGCCTGATGCGAAAACTGTTGAGAAGGCAAGGAAGGCCGGAATCAGCAAGATTGAGATAAGTCATGATCCGAAAGAAGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGCATATCGTCGTGAAGCGTTTAAAGGATTTCAGGTGGATCAGAATCTTATGGATGCAGCTGGTTCCAAGGCATTTTTCATGCACTGCTTACCAGCGGAAAGAGGGGTGGAGGTGACTGACGAAGTTGTTGAAGCTCCATATTCAATAGTCTTCCCTCAAGCTGAGAACCGAATGCATGCACAGAACGCCATAATGCTCCATGTACTTGGCAAGTAG 786 0.4453 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFSHQDILDLAKYASVPVINGLTDYNHPVQIMADALTMIEHIGRFEGTKVVYVGDGNNIVHSWLLLAAVVPFHFVCACPKGFEPDAKTVEKARKAGISKIEISHDPKEAVKGADVVYSDVWASMGQKEEAAYRREAFKGFQVDQNLMDAAGSKAFFMHCLPAERGVEVTDEVVEAPYSIVFPQAENRMHAQNAIMLHVLGK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0391 261 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 100 IPR006132 GO:0006520|GO:0016743
Psa5g0391 261 Gene3D Aspartate/ornithine carbamoyltransferase 90 246 IPR036901 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 1 260 - -
Psa5g0391 261 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 5 24 IPR006130 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 87 98 IPR006130 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 212 221 IPR006130 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 224 247 IPR006130 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 2 260 IPR036901 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 Gene3D Aspartate/ornithine carbamoyltransferase 2 255 IPR036901 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 2 259 IPR002292 GO:0016743
Psa5g0391 261 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 106 257 IPR006131 GO:0006520|GO:0016597|GO:0016743
Psa5g0391 261 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 1 260 - -
Psa5g0391 261 PRINTS Ornithine carbamoyltransferase signature 3 17 IPR002292 GO:0016743
Psa5g0391 261 PRINTS Ornithine carbamoyltransferase signature 36 49 IPR002292 GO:0016743
Psa5g0391 261 PRINTS Ornithine carbamoyltransferase signature 76 90 IPR002292 GO:0016743
Psa5g0391 261 PRINTS Ornithine carbamoyltransferase signature 176 186 IPR002292 GO:0016743
Psa5g0391 261 PRINTS Ornithine carbamoyltransferase signature 238 249 IPR002292 GO:0016743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0391 Psa-Chr5 31084148 31086675 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0391 K00611 - gmx:100796780 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0391 5 31084148 31086675 Psa5g0391 5 31084148 31086675 ECH