Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa5g0340 | ATGTCTGCTTCAGAGGGTGAGAAGAAGGTTGTGGAAGAGAACGAAGTTCCGAAAGGTGGAGAGCTTTTGTTCTGTGGTGCCACGTGTTGGGATAGTGTTGGTCGCCGGAAAGGTCCGGCTGAGAGTAACTTGATTTCTCCGTCGCGGCTCCGTCCTCTCGTTGGCATTGATATTCGTTACGTTGCCTCTGGTTGCGCGTCTTGTCATTGCTTGGCGTTGGATGTTGAAGGGCGTTGTTATACATGGGGACGTAATGAGCGTGATAGGCCTACTGTGGTGTCTGGGCTTTCAAAATACAAAATTGTTCAAGCTGGAACTGGGAAGAGCCACACAGTAGTTATTACAGATGATGGAAATTCCCTAGCATTTGGATGGAACAAACATGGACAGCTAGGTTCGGGTTCTACAAAAACTGAAATTGAATCATCTCCCGTTCGCTGTGTCGTTTCTGACGTTAAATATGCTACATGTGGTAGCGACTTTTCTGTCTGGTTATCTTCAGTTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGGACAGATAATGAGTATAATTCCAAAGAAAGCTCTGTGAAATTAATTTATGAACCACAGCCACGACCTCGAGCCATAGCTTCCCTTGCTGGTGAAACTATTGTCAAGGTGGCATGTGGATCAAATCACACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTATGGTGGTTACGGAAGGCTAGGACATAGGGAGCAGAAGGATGAATTTACTCCACGTCGTGTTGACATTTTCACAAATAGAAATGTTTTACCTCCTGATGCAATTATTTCAGCAGGTTCTATGAATTCTGCTTGTACTGCAGCTGGAGGGCAGTTGTACATGTGGGGCAAACTAAAGAACACCGGGGATGACTGGATGTACCCGAAGCCTCTAATGGACTTGAGTGGTTGGAATATACGATGCATGGATTCAGGGGGTATGCACCATTTTGTTGGGGCTGATTCCTCATGCATAAGTTGGGGTCATGCTCAGAATGGAGAGCTGGGATACGGACCTACTGGACAGAAGTCTTCAGCTGTACCCAAAAAGGTGGATTTACTTGAGGGTATGCATGTAATGAGTGTTGCTTGTGGTCTGGGTCATTCCATGATTGTGGTTGACAGAGCAAATGTTGCTGAAAGACTTGACCAGCTTGATACACATGACGGCAAAGCTGTTGGTGAAGGTAATGCGCCTGTGAACAACACTCCAGTCCCTAAGAAGGCTGCTGTTCCTAAAAAGGGTGCAAAGAAAGCTGACAACTCGAAGAAGAGGAAAAAAGCAAAAGATTCATCTGACTCGGAAGAAGAGCAAGAACAGGCTGAAGAAAGTAGTGACAATAGTGACTATGAAGTTAATGGCGAGGCCGAGGTTAAGGCACCACGTGGTGGAAAAAATTCTGGCAAGGGCCGAGGAAAGGCAACGAAAAAGTCGGAGTCTGAGAGCAAAGGTTCTGGCCGAGGGCGCAGCCGCACTCCTGCAAATAAAAGCAGTACTAAATCTTCTCCAGTGAAGTCATCTGGTAAGAGAGGAAGACCCAGAAAGGCATGA | 1599 | 0.4684 | MSASEGEKKVVEENEVPKGGELLFCGATCWDSVGRRKGPAESNLISPSRLRPLVGIDIRYVASGCASCHCLALDVEGRCYTWGRNERDRPTVVSGLSKYKIVQAGTGKSHTVVITDDGNSLAFGWNKHGQLGSGSTKTEIESSPVRCVVSDVKYATCGSDFSVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKESSVKLIYEPQPRPRAIASLAGETIVKVACGSNHTVAVDKNGFVYTWGYGGYGRLGHREQKDEFTPRRVDIFTNRNVLPPDAIISAGSMNSACTAAGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDLLEGMHVMSVACGLGHSMIVVDRANVAERLDQLDTHDGKAVGEGNAPVNNTPVPKKAAVPKKGAKKADNSKKRKKAKDSSDSEEEQEQAEESSDNSDYEVNGEAEVKAPRGGKNSGKGRGKATKKSESESKGSGRGRSRTPANKSSTKSSPVKSSGKRGRPRKA* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa5g0340 | 532 | MobiDBLite | consensus disorder prediction | 503 | 522 | - | - | |
| Psa5g0340 | 532 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 338 | 391 | IPR000408 | - | |
| Psa5g0340 | 532 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 171 | 236 | IPR000408 | - | |
| Psa5g0340 | 532 | MobiDBLite | consensus disorder prediction | 451 | 466 | - | - | |
| Psa5g0340 | 532 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 104 | 114 | IPR000408 | - | |
| Psa5g0340 | 532 | Gene3D | - | 200 | 421 | IPR009091 | - | |
| Psa5g0340 | 532 | PANTHER | PROTEIN RCC2 | 6 | 516 | IPR028641 | - | |
| Psa5g0340 | 532 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 77 | 117 | IPR000408 | - | |
| Psa5g0340 | 532 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 342 | 387 | IPR000408 | - | |
| Psa5g0340 | 532 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 117 | 163 | IPR000408 | - | |
| Psa5g0340 | 532 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 174 | 233 | IPR000408 | - | |
| Psa5g0340 | 532 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 236 | 288 | IPR000408 | - | |
| Psa5g0340 | 532 | MobiDBLite | consensus disorder prediction | 488 | 502 | - | - | |
| Psa5g0340 | 532 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 223 | 233 | IPR000408 | - | |
| Psa5g0340 | 532 | Gene3D | - | 5 | 199 | IPR009091 | - | |
| Psa5g0340 | 532 | PRINTS | Chromosome condensation regulator RCC1 signature | 101 | 114 | IPR000408 | - | |
| Psa5g0340 | 532 | PRINTS | Chromosome condensation regulator RCC1 signature | 120 | 136 | IPR000408 | - | |
| Psa5g0340 | 532 | PRINTS | Chromosome condensation regulator RCC1 signature | 223 | 239 | IPR000408 | - | |
| Psa5g0340 | 532 | PRINTS | Chromosome condensation regulator RCC1 signature | 239 | 253 | IPR000408 | - | |
| Psa5g0340 | 532 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 118 | 168 | IPR000408 | - | |
| Psa5g0340 | 532 | MobiDBLite | consensus disorder prediction | 403 | 532 | - | - | |
| Psa5g0340 | 532 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 237 | 292 | IPR000408 | - | |
| Psa5g0340 | 532 | SUPERFAMILY | RCC1/BLIP-II | 18 | 391 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa5g0340 | Psa-Chr5 | 24434637 | 24440364 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa5g0340 | - | - | pvu:PHAVU_009G015100g | 818.92 |
Event-related genes