Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0319 ATGGGGGAAAAGAGGTCGAAAGGAGGATGTTGTGGTTGGTTTATTGCGCTTGTGATTCTGGCTCTTGTTGTTGGCGCTGTTGTTTATGCTATTAAGAAGAAAACTGATAACGATTCTGATAAACCAGCTCCGGTTCCGGGTCCTCCTGGTGCCATTGAACAGAAATATGCTTCTGCTCTCAAAACGGCAATGCAATTCTTCGATATACAAAAATCTGGCAAGTTAGAGAACAATAAAATAAGTTGGAGAGGGGATTCGTCTCTTAAGGATGGAAAAGAAGCAAATATAGATCTTTCAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTTGGTTTTCCAATGGCTTTTACTGCCTCGGTACTATCATGGGCGATTTTGGAATATGGAGATCAAATGGATGCGGTTGGACAATTGGAACCAGCTCAAGATTCGCTCAAGTGGATCACTGATTTTCTCGTCAATGCTCACCCTTCCGAGAATGTTCTGTATATTCAGGTCGGAGATCCTGTTGCCGATCACAAGTGTTGGGATAGACCTGAGTCAATGACCGAGGCCCGACCCCTCTTACAAGTGAACACATCCTCTCCCGGATCAGATGTTGCAGCCGAAACTGCAGCAGCCATGGCATCGGCGTCTTTGGTCTTCAAAAAGACAGATCCTACCTATTCAAGCACTCTCCTCAAGCATGCAAAACAGCTATTTAGTTTTGCGGACAATTACAAGGAGATTTACAGCGTGAGTATACCTGAAGTCGCAACATATTATAACTCAACTGGATTTGGTGATGAGCTTTTATGGGCAGCTACCTGGCTCTATCACGCTACCGGCGATGATTCTTACCTTGAGTATGTGACTGGCCAAACTGGAGACGAGTATGCTGAATTCGGAAGCCCAAGCTGGTTCAGTTGGGACAACAAGCTCGCCGGAACTCAGGTTTTGTTATCTAGAATAAGCTTCTTCAAAACAAAGGGTGTTTCAAGTTCATATGGTTCTGGCCTTCAAAAATACCGGAAATCTGCCGAGGCTGTAATGTGCGGCCTTCTTCCAAATTCTCCAACGGCCACAACGAGCAGAACCGATAATGGTTTGATATGGGTGAGCGAATGGAACTCTTTGCAGCAGCCTGTTGCATCGGCATTCTTAGCTTCTGTTTACAGCGACTATATGCTTACATCGCAAACTCCCAAAATAAATTGCGATTCAGATTCCTACACCCCAAGAGATCTTCGAAACTTTGCCAGATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTCTGCATATGAGTTATCTGGTGGGATATGGAGACAAATTCCCGCAATTCGTTCATCACAGGGGCGCATCAATTCCGGCGAATGCAAAAGTTGGTTGCAAAGACGGCTTCAAATATCTGGATTCATCTGATCCAAATCCCAATGTAGCTACCGGAGCACTTGTTGGCGGACCTTTCTTAAATGACACTTACATCGACTCTCGGAACAATTCTATGCAAGCGGAACCAAGCACGTATAACAGTGCTGTCATAGTTGGTCTCTTGTCAAGTTTAGTCACCACGTCTTCTGCGGTTCAATCGTTTACCTAA 1584 0.4495 MGEKRSKGGCCGWFIALVILALVVGAVVYAIKKKTDNDSDKPAPVPGPPGAIEQKYASALKTAMQFFDIQKSGKLENNKISWRGDSSLKDGKEANIDLSKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLKWITDFLVNAHPSENVLYIQVGDPVADHKCWDRPESMTEARPLLQVNTSSPGSDVAAETAAAMASASLVFKKTDPTYSSTLLKHAKQLFSFADNYKEIYSVSIPEVATYYNSTGFGDELLWAATWLYHATGDDSYLEYVTGQTGDEYAEFGSPSWFSWDNKLAGTQVLLSRISFFKTKGVSSSYGSGLQKYRKSAEAVMCGLLPNSPTATTSRTDNGLIWVSEWNSLQQPVASAFLASVYSDYMLTSQTPKINCDSDSYTPRDLRNFARSQADYVLGKNPLHMSYLVGYGDKFPQFVHHRGASIPANAKVGCKDGFKYLDSSDPNPNVATGALVGGPFLNDTYIDSRNNSMQAEPSTYNSAVIVGLLSSLVTTSSAVQSFT* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0319 527 Gene3D - 52 520 IPR012341 GO:0005975
Psa5g0319 527 PANTHER ENDO-1,4-BETA-GLUCANASE 10 527 - -
Psa5g0319 527 SUPERFAMILY Six-hairpin glycosidases 54 519 IPR008928 GO:0005975
Psa5g0319 527 Pfam Glycosyl hydrolase family 9 56 513 IPR001701 GO:0004553|GO:0005975
Psa5g0319 527 PANTHER ENDOGLUCANASE 2 10 527 - -
Psa5g0319 527 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 420 446 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0319 Psa-Chr5 22615381 22618915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0319 1 526 Glycoside Hydrolase AT1G75680 68.561 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0319 - - gmx:100812226 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0319 5 22615381 22618915 Psa5g0319 5 22615381 22618915 ECH