Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0294 ATGACTCAAGATCTTGAGATGAAAGATCGTTCATCTCCTTCCAACTCCGTTTCTCCACCGATTCCATCTACTTTGCAGCATTTGAAGGAGATAGCAACGCTCATCGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATTGCTCGTGCTGTTCGTCTTACAATTGCATTGAGACGGAAATTGACAGCTTCTGTTATCACGTCTTTTCTTGATCATGTGCTTACTTTTCGTCTTACAATTGCATTGAGACGGAAATTGACAGCTTCTGTTATCACGTCTTTTCTTGATCATGTGCTTACTCCTGGTTCTGAATCTCATGCCAAATTGTCTGCTTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGACGCTGCAACGTCTGCGATTCAAACCCCTGCAACTAAACATTTGTTGCCCGAGCTAGAAATTTACTGTTATCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCGTTGCTTGGCTGAAGAATGTGAACAGAAGAACTGTGGATGTTATTGCATCTAGACTATTTTTTTACTATTCATATAGCCATGAACTTACTGGAGATCTAGCTGAAATTAGGGGCAACCTCCTTGCATTGCACCGGATTGCCACTCTGCGCCATGATGAGTTGGGCCAGGAAACCCTTTTGAATTTATTACTTCGCAACTATCTTCACTACAACCTATTTGACCAAGCAGAGAAGTTGAGGTCAAAGGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTTTGCCGTTATCTCTTCTACCTCGGGAAAATCCGGACAATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAGGCTCCAGTTGCAGCCCGGGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTGCGTTTGCTGTTGGGAGAAATACCTGAACGGACTGTCTTTATGCAGAAGGGAATGGAGAAAGCGCTAAGGCCTTACTTTGAGCTTACAAATGCTGTCCGTATTGGAGACTTGGAGCTGTTTAAGAACATTGCAGATAAGTTTGCAACCACCTTCAGTGCAGACGGAACCCACAATTTGATTGTTCGCCTGCGGCATAATGTCATCAGGACAGGTTTGCGTAACATCAGCATCTCATATTCTCGCATCTCACTAGCTGATGTTGCTAAAAAATTGAGGTTGGACTCGCCAAATCCTGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATTCAAGTGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGCAGGCTTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAACACACACAAAGAAAAAGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAACTGGCCAAGCATATTGCAGAGGAGGATGACGATGATTTTTGA 1542 0.4326 MTQDLEMKDRSSPSNSVSPPIPSTLQHLKEIATLIETGSYSKEVRRIARAVRLTIALRRKLTASVITSFLDHVLTFRLTIALRRKLTASVITSFLDHVLTPGSESHAKLSAYLPKEDDHEMEVDAATSAIQTPATKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLFDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHSSGWMVSKETGDIYSTNEPQQAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0294 513 ProSiteProfiles PCI domain profile. 265 446 IPR000717 -
Psa5g0294 513 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 76 513 - -
Psa5g0294 513 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 75 - -
Psa5g0294 513 SUPERFAMILY "Winged helix" DNA-binding domain 372 447 IPR036390 -
Psa5g0294 513 Pfam Proteasome regulatory subunit C-terminal 446 512 IPR013586 GO:0000502|GO:0030234|GO:0042176
Psa5g0294 513 Coils Coil 480 507 - -
Psa5g0294 513 Pfam PCI domain 337 442 IPR000717 -
Psa5g0294 513 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 75 - -
Psa5g0294 513 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 76 513 - -
Psa5g0294 513 MobiDBLite consensus disorder prediction 477 513 - -
Psa5g0294 513 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 371 464 - -
Psa5g0294 513 Gene3D - 144 469 - -
Psa5g0294 513 MobiDBLite consensus disorder prediction 477 506 - -
Psa5g0294 513 SMART PINT_4 371 464 IPR000717 -
Psa5g0294 513 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0294 Psa-Chr5 20998683 21003245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0294 K03033 - gmx:100814379 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0294 5 20998683 21003245 Psa5g0294 5 20998683 21003245 ECH