Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0291 ATGTTATCGCTTAACAGCTCATGTGCATGTTGCGGTGTTTCCACAGCAACAAGAGCATTCCACTTTCAGCTTCGAACTCCACCGTCACTATTTTCCTTCTCTCCCATTAAGAATTTTAAATTTGCGAGAGCCGTTTCTGGATTCTCCGATGAATCCAACCCTAACGGAGAACCAAAATTGAATTACTCCGGCGTGCGGTTGGAAGAGATCGTCGACGGTGGAATCAAATCGGGAAAACTCAGACTCGACAGTTGGATCTCTTCTCGCATCAATGGAATCAGTAGAGCTCGCGTTCAATCAAGTATTAAAGCGGGACTTGTTCATGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAATGCACAATTGCGGAGTTGCAGCAGTTGAGAGCTGTGCCAGAAAACATACCTTTGGATATAGTTTTTGAAGATGAGCATTTGCTAGTCATAAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGAAATACGTCTGGGACACTTGTCAATGGCATCCTTCACCATTGCAACCTGCCAAATGTTGAATATTCTAAAGAGGAAGCTCTTTCAGATACAGAAGATTTTGATGATGAACTTAATGGCTTCTCATCTAAGGCAAGTTCTTGTGAAGGGTTAGATTCTAGATTGTCTATGCCTTCAATTCGCCCAGGGATTGTACACAGATTAGACAAAGGCACGAGTGGGTTGCTAGTTGTGGCCAAGGATGAACATTCTCATAAGAAATTGTCTGAACAATTCAAGCTACGCACTATTAAGAGGGTCTATGTTAGTCTCACTGCTGGGGTACCCACTCCAGTTGCTGGGCGTGTTGAGGTTCCGGTTGGTCGGGATCCTAATAACCGGCTTCGGATGACCGCTGTTGCTGGAGCAGTTAATTCTATAAAGGCTCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCCTTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAAGTATTTGGGCGTACCTCTGCTTGGTGACGAGGTATATGGAGGGACGAAAAGCATGGTATTGTCACTGCTACGGCCACGAACAGCCCAGAGTTTGCATGGCGAAATGGTTAAAGTAGTTTCTGAGCTAGACAGGCCTTGTCTTCATGCTTTGACTCTCGGGTTTGAGCATCCTCATACAGGGGAACAAGTGCACTTTTCATGCGAGCCCCCTGTAGATTTTAATGAGATTTTGAGCCATCTTCGTAGAATTGGCAGGGATAGGATTTCTTTATCAAAGGTTAAATTTGTAAAAGGGGCATTGTAA 1353 0.4501 MLSLNSSCACCGVSTATRAFHFQLRTPPSLFSFSPIKNFKFARAVSGFSDESNPNGEPKLNYSGVRLEEIVDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVFEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEYSKEEALSDTEDFDDELNGFSSKASSCEGLDSRLSMPSIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGAVNSIKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTAQSLHGEMVKVVSELDRPCLHALTLGFEHPHTGEQVHFSCEPPVDFNEILSHLRRIGRDRISLSKVKFVKGAL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0291 450 ProSiteProfiles S4 RNA-binding domain profile. 80 153 - -
Psa5g0291 450 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 79 432 - -
Psa5g0291 450 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 79 432 - -
Psa5g0291 450 SUPERFAMILY Alpha-L RNA-binding motif 79 167 - -
Psa5g0291 450 CDD PseudoU_synth_RluA_like 155 404 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Psa5g0291 450 ProSitePatterns Rlu family of pseudouridine synthase signature. 235 249 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Psa5g0291 450 CDD S4 81 159 - -
Psa5g0291 450 SUPERFAMILY Pseudouridine synthase 140 431 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Psa5g0291 450 Pfam RNA pseudouridylate synthase 154 349 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Psa5g0291 450 Pfam S4 domain 81 127 IPR002942 GO:0003723
Psa5g0291 450 Gene3D Pseudouridine synthase 137 419 - -
Psa5g0291 450 Gene3D - 66 136 IPR036986 GO:0003723
Psa5g0291 450 SMART s4_6 80 145 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0291 Psa-Chr5 20901847 20909058 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0291 K06180 - gmx:100810383 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0291 5 20901847 20909058 Psa5g0291 5 20901847 20909058 ECH