Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0287 ATGGCACTCATCAAATCAAGGGCACACTCTCACTTGCACCACTCACTTTTCCAGCACTTACCATACACTTTCCGACTATGTTCTTCTTCACCTCTCCTTTCACACGAAACCAGCGAGAACAACACTCCTCAAAACACCAATCTATCCCCCGAAGACTCTAACATTATCGACAAATTTCACACCGTCATTAAAGACCACTACCGCAAAAACCCTAACCCTAACCCTAATCCCATTTTACCCTCACACAATTTCTCCATACCCGATCTCTCCATTGATTTTTCCAAAATCTCAACCGCCCATTCAATTTCCCCCTCCATCACCCGCCGCGTGATTGAGAAATGCGCCGGTGTCCGCCACGGCATCCCATTCCTCCAATCCCTAGCTTTCTTCAATTGGGCCACCACCCTAGAAGGCTTCCCCTCCTCCCCGGAGCCTTACAATGAGATGATCGACCTCGCCGGAAAGCTCAGACACTTCGATTTAGCATGGAATTTGATCGATTTGATGAAATCGCGTGGTGTCAAAATAACCATAAGCACGTTCTCTATCCTCGTCCGACGATACGTGAGGGCCGGATTGGCCGTGGAGGCGGTGCATGCTTTTAATCGAATGGAGGACTATGGTTGTACTCCTGATAAGGTTTCATTTTCAATTGTTATTAGTAGTTTGTGTAAGAAGAGAAGAGCTAGTGAAGCGCAAACGTTTTTCGATAGTCTTAAGCATAAGTTTAAGCCTGATGTTATAGTTTATACTAGCTTAGTTCATGGTTGGTGTCGCGCTGGTGATATATCGAAAGCCGAGGAGGTTTTCAGTGATATGAAGGTGGCTGGTGTGAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGCTTTGTCGGAGTGGACAAATCACTCGTGCTCATGATGTTTTCTCTGAGATGATAGATGCTGGATGTGATCCTAATGCTGTTACTTTTAATAGTCTAATGAGGGTTCATGTGAAAGCTGGTAGGACTGAGAAGGTTTTGCAGGTTTATAATCAAATGAAGAGACTCGGTTGTGCTGCTGATACGATTAGTTACAATTTCCTCATTGAGAGTCATTGTAAGGATGAGAATCTTGATGAAGCTGTGAAGGTTCTTGATACTATGGTTAAGAAAGGGGTTGCTCCTAATGCATCTACTTTTAATTCAATTTTCGGATGCATAGCTGAGTTGCATGATGTGAATGGCGCGCATCGGATGTATGCTAAAATGAAGGAACTGAAATGCTTGCCTAATACCTTGACTTATAATATACTGATGAGAATGTTTGTTGACTCGAAATCTATTGATATGGTTTTGAAGTTGAAAAAGGAAATGGATGAGAATCAAGTTGAACCTAATGTGAATACTTACCGGATTTTGATTATGATGTTTTGTGAAAAGGGGCACTGGAATAATGCATACAATTTCATGAAGGAAATGGTTGAAGAAAAAAGCCTAAAGCCAAATCTATCGATTTATGAAATGGTTTTGGAGCTGTTGAGGAAGGCTGGACAGCTCAAAAAGCATGAAGAGTTGGTCGATAAAATGGTTTCGAGGGGATTCGTCGCTCCTCGCCCTTTGTAA 1593 0.4244 MALIKSRAHSHLHHSLFQHLPYTFRLCSSSPLLSHETSENNTPQNTNLSPEDSNIIDKFHTVIKDHYRKNPNPNPNPILPSHNFSIPDLSIDFSKISTAHSISPSITRRVIEKCAGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWNLIDLMKSRGVKITISTFSILVRRYVRAGLAVEAVHAFNRMEDYGCTPDKVSFSIVISSLCKKRRASEAQTFFDSLKHKFKPDVIVYTSLVHGWCRAGDISKAEEVFSDMKVAGVKPNVYTYSIVIDSLCRSGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCLPNTLTYNILMRMFVDSKSIDMVLKLKKEMDENQVEPNVNTYRILIMMFCEKGHWNNAYNFMKEMVEEKSLKPNLSIYEMVLELLRKAGQLKKHEELVDKMVSRGFVAPRPL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0287 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 526 - -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Psa5g0287 530 Gene3D Tetratricopeptide repeat domain 402 527 IPR011990 GO:0005515
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Psa5g0287 530 Gene3D Tetratricopeptide repeat domain 238 311 IPR011990 GO:0005515
Psa5g0287 530 Gene3D Tetratricopeptide repeat domain 109 233 IPR011990 GO:0005515
Psa5g0287 530 Gene3D Tetratricopeptide repeat domain 312 401 IPR011990 GO:0005515
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 491 IPR002885 -
Psa5g0287 530 Pfam PPR repeat family 351 395 IPR002885 -
Psa5g0287 530 Pfam PPR repeat family 420 468 IPR002885 -
Psa5g0287 530 Pfam PPR repeat family 186 225 IPR002885 -
Psa5g0287 530 Pfam PPR repeat family 245 294 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Psa5g0287 530 Pfam PPR repeat 146 174 IPR002885 -
Psa5g0287 530 Pfam PPR repeat 318 348 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Psa5g0287 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Psa5g0287 530 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 15 526 - -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 180 212 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Psa5g0287 530 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0287 Psa-Chr5 20819405 20822487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0287 136 530 Glycosyltransferase AT1G05670 24.826 4.41e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0287 - - gmx:100800850 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0287 5 20819405 20822487 Psa5g0287 5 20819405 20822487 ECH