Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0270 ATGCAAGCTGTTTCATCTGGTATCGGATACGGTCTCAAATATCAGGCTAGATGCATATCAGATGTAAAAGCAGATACAGATCACACAAGTTTCCTCGCTGGAACTCTCAGTCTTAAAGAAGAAAATGAGATTCATCTTATTCGGCTTTCTGCAAGTGGAACTGAACTTTTCTGTGAGGGATTGTTTTCGCATCCCAACGAGATCTGGGACCTTGTTTCTTGTCCTTTTGATCAGCGAATTTTCTCAACCGTCTACTCTAACGGTGAATCATATGGGGCAGCAATATGGCAGATTCCGGAATTGTATGGCGAGTTAAATTCCCCTCAGTTAGAGAGAATTACATCTCTTGAAACTAAATCCGGTAAGATTAAAAGTATTCTTTGGTGGCCAACTGGAAGGCACGATAAGTTGATTAGCATCAACGATGAAAGCCTATGTTTGTGGAGTTTGGACGTGTCCAAGAAAACTGCACAGGTACAAGCACAAGATTCAGCTGGTATACTGCACAAGTTATCTGGAGGAGCATGGGATCCTCATGATGTTAATTCTGTAGCTGCAACTTGTGAATCATCTCTCCAGTTTTGGGATGTGAGGACAATGAAGAAGACACTCTCAATTGAGTGTTCCCATGTCCGCAGTGCTGATTACCATCCTAGAAAAAACAACATACTTGTTACAGCAGAACATGAGTCAGGGATACGCATTTGGGATCTAAGAAAACCAAAAGTTCCCATCCAAGAGCTTCCAGGCCATACACATTGGACATGGATCGTCAAGTGTAACCCAGAGTATGACGGAATAATCTTGAGTGCTGGAACGGATTCGACTGTCAACTTGTGGTCGGCTTCTATAAACCATGACGAGTTAACAACTGAAAGCCAACCAGAGTCACCGGCCCGTTTGGTTGATCCATTGCTTAATACATACAGTGACTATGAAGACAGTATTTATGGGCTTACATGGAGTTCTCGTGAACCATGGATCTTTGCATCCTTGTCCTATGATGGAAGGGTGGTTGTAGAATCTGTAAAGCCTTTCATCTCCAGGAAATGA 1053 0.4274 MQAVSSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEIHLIRLSASGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGESYGAAIWQIPELYGELNSPQLERITSLETKSGKIKSILWWPTGRHDKLISINDESLCLWSLDVSKKTAQVQAQDSAGILHKLSGGAWDPHDVNSVAATCESSLQFWDVRTMKKTLSIECSHVRSADYHPRKNNILVTAEHESGIRIWDLRKPKVPIQELPGHTHWTWIVKCNPEYDGIILSAGTDSTVNLWSASINHDELTTESQPESPARLVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISRK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0270 350 Pfam WD domain, G-beta repeat 244 281 IPR001680 GO:0005515
Psa5g0270 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 281 IPR001680 GO:0005515
Psa5g0270 350 PANTHER WD-REPEAT PROTEIN 1 350 IPR040323 -
Psa5g0270 350 SMART WD40_4 241 281 IPR001680 GO:0005515
Psa5g0270 350 SMART WD40_4 55 97 IPR001680 GO:0005515
Psa5g0270 350 SMART WD40_4 109 149 IPR001680 GO:0005515
Psa5g0270 350 SMART WD40_4 302 342 IPR001680 GO:0005515
Psa5g0270 350 SMART WD40_4 197 237 IPR001680 GO:0005515
Psa5g0270 350 Gene3D - 14 348 IPR015943 GO:0005515
Psa5g0270 350 PANTHER WD REPEAT-CONTAINING PROTEIN DWA2 1 350 - -
Psa5g0270 350 SUPERFAMILY WD40 repeat-like 19 340 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0270 Psa-Chr5 19811636 19816658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0270 K23289 - gmx:100779030 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0270 5 19811636 19816658 Psa5g0270 5 19811636 19816658 ECH