Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0262 ATGTCTTCTACTCCACCTGATGCCAACCCTGCCGCCAACTTCCCGCGAAATAACCTAACCTCTCCGTGGGCTCAGGTTGTTCGCGGCGCTGATTCCGATTCGGTCAGCAATCAAACGCCGCCGGAGTCTTCTTCGCCGTCGTCTCTCGATTCGGGAAATTCTGTTGCTCCTGTTGTTGCTGCTGTTGCCGCTGTTGTTGTTGCCGGGGAAAGCTCTAATGCTGATAAGGATAACAATGCGGGTAACCCTAGGAGATCTGCTTGGAATAATCTTCCCAATGGCGGTGTTGCTGAGGTGAGTCCGGTAATGGGGGCTGTCTCTTGGCCTGCTTTATCGGCTAAGCCTTCTGGAAAATTGCCATCTGATTCATCATCCTCTGGTGAGGGATCAAGCTCCGTTCCTCAGGGTCCTGTTACATTGAACAACCCTCGGGAACAACCTACTGCTAATGGGAATGTGGAACCTACTCCTCCGGTGAATCATGGTGTGACTAATAGACAACAGGTGAGGCGCGGAGCAGGCGCAGGCAACAGTGGTAGCAACATTAGCAATGGGCCTGGTTCTTTTCCCAACAGCTTCTCCACCCCCCCTCAGGCTGATCTTCGACCACAGGCTTCTCCTCCACCATATCCGGTGATTCAGATCACTTCAAATACCACATTTGTCAACGGGGTTCCGCCTTACCGGAACAACAATGGCTGGGTTCCAAGAGGACCTGTTGGGGCTTATGGGGTGTCGGTGGATGAGCACAGGAACCCTAACCGCAGGGGTAATTATGGGAACCGTCCACATAACAACAACATTAGGCGCAATCAGGATCCAGGAAATATAAACACTAGAGATGTTCATGGACATCAACATAGGATGCAGTCAGGAAGATTTTCAAGGCCCACAGTACCTAACACTGCTTCGTTTTTAGGTTCTCAGCCTATGAGACCCTATGTAAACCCTACTGGGTTCCATGAATTCTATTATTATCCAACTGTTCAACTCGAACCCTTCGGAGGTGTGCCATTTTTGACTCACCCACCTCCTCCAGCTGTGTTTGTCCCAGTTCCAGAGAATTCTCTGACCACTGCAATAGTCAAGCAAATTGACTATTACTTTAGCGATGTTAATTTAGCGAAGAAAGACGACTATCTGCAGCTCCAGATGGACGAACAGGGCTGGGTTCCAATTAGTGTGATTGCAAACTTCCCCCGAGTAAGTTAA 1212 0.4983 MSSTPPDANPAANFPRNNLTSPWAQVVRGADSDSVSNQTPPESSSPSSLDSGNSVAPVVAAVAAVVVAGESSNADKDNNAGNPRRSAWNNLPNGGVAEVSPVMGAVSWPALSAKPSGKLPSDSSSSGEGSSSVPQGPVTLNNPREQPTANGNVEPTPPVNHGVTNRQQVRRGAGAGNSGSNISNGPGSFPNSFSTPPQADLRPQASPPPYPVIQITSNTTFVNGVPPYRNNNGWVPRGPVGAYGVSVDEHRNPNRRGNYGNRPHNNNIRRNQDPGNINTRDVHGHQHRMQSGRFSRPTVPNTASFLGSQPMRPYVNPTGFHEFYYYPTVQLEPFGGVPFLTHPPPPAVFVPVPENSLTTAIVKQIDYYFSDVNLAKKDDYLQLQMDEQGWVPISVIANFPRVS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0262 403 Gene3D - 350 403 IPR036388 -
Psa5g0262 403 MobiDBLite consensus disorder prediction 113 187 - -
Psa5g0262 403 Pfam La domain 361 402 IPR006630 -
Psa5g0262 403 ProSiteProfiles La-type HTH domain profile. 351 403 IPR006630 -
Psa5g0262 403 CDD LAM 360 402 - -
Psa5g0262 403 MobiDBLite consensus disorder prediction 69 92 - -
Psa5g0262 403 PANTHER LUPUS LA PROTEIN-RELATED 29 403 IPR045180 -
Psa5g0262 403 MobiDBLite consensus disorder prediction 72 89 - -
Psa5g0262 403 PANTHER LA-RELATED PROTEIN 1B 29 403 - -
Psa5g0262 403 SUPERFAMILY "Winged helix" DNA-binding domain 348 402 IPR036390 -
Psa5g0262 403 MobiDBLite consensus disorder prediction 117 187 - -
Psa5g0262 403 MobiDBLite consensus disorder prediction 1 54 - -
Psa5g0262 403 SMART la 355 403 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0262 Psa-Chr5 19451336 19454942 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0262 K18757 - gmx:100775279 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0262 5 19451336 19454942 Psa5g0262 5 19451336 19454942 ECH