Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0234 ATGGAACTTCATCTTCATCATCGCATAGGGCTTCTCACTCTTCTCTCTCTACTACAGGTTTGTTTAATATCTTTAACAGAAGCAGAAGTTTTATCCTCAAGGCTTCTTTTGGCATCTAATGATAAAACACCTCGGGAAAAGCATTCTGAGGATTATTGTTCAATGTATGATATTTGTGGAAAGCGAAGTGATGGTAAAGTAGTGAATTGTCCATTTGGTTCTCCTGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAATGTTTGCTGTACAGAAGCTCAGTTTGAGACATTAAGGACGCAAGTTCAGCAGGTTATTCCTTTTCTTGTAAGTTGTCCGGCATGTTTAAGAAACTTTCTGAATCTATTCTGCGAGCTTACATGCTCTCCAGATCAGAGTTTATTTATCAATGTGACTTCAGTAGACAAGGTTGGTGGTAATTTGACAGTGGGTGGCATCGATTATTTCGTAAGTGACACATTTGGGGATGGATTATATGACTCCTGCAAGGATGTAAAGTTTGGCACCACAAATTCTAGGGCTATACAATTTGTTGGCGGCGGTGCTCGAAATGTTAAAGAGTGGTTTGCTTTTATTGGCAAAAAAGCAGCCCCCAATGGTCTTGGTTCACCATATGCAATTACGTTCCAACCAAATGCAATTAAGTCATCTGGAATGGAACCTATGAATGTTTCAGCTTATTCCTGCGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAATTCATCTTCAGCTACAACCCAAAAGAAGGGTTCGTGCTCCTTGAAAGTTGGGACTTTAACGGTTAAGTGTGTTGACTTGATTTTAACAGTCTTATACATCATACTGATATGCGTGTTCTTGGGTTGGGGGTTGTATCATCGAGTAAGGGAAAGAAAGCCGGTATATAGAGCGAAATCAGTGTCTAATGACACTAATGGTAGCACACTGTATTCTCATAATCAGGAGAAGGAGGAGAACCTCCCAATGCACCAGATTATTGAAGATGTTTCACAAAACAGAAACGAAGTGCGACTCTCTGCCGTGCAAGGATACATGTCAACTTTTTACAGGAAGTATGGATTGTATGTAGCTAGAAACCCAAATGTGGTCTTGGCTTCATCTTTGGCCATACTCTGGGTGGGACCAGGGAGTAAAGCAGCGGAAGAGAAGCAGTTTTTTGACAGCCATCTTGCTCCGTTTTACAGAATTGAACAGCTCATACTGGGAACAATTCCAGATGATGTGAATAGTACATCACCAAGAATTGTGTCAGAGGACAACATTAAGTTTCTGTTTGAAGTACAAAAGAAGGTTGATGCAATTCGTGCTAATCATTCTGGCTTGATGGTATCTCTACAAGACATTTGTATGAAGCCATTAGACACAAATTGTGCCACTCAAAGCATCCTGCAGTACTTCAAAATGGATCCCGACAATTTCGACAATTATGGTGGAGTTGATTATCTCAATCAATGTATGAGTGCATTTAAAGGCCCTCTTGATCCAAGCACGGTATTAGGAGGCTTTTCTGGGAATGACTATTCTGGGGCTTCTGCATTTATTATAACTTACCCAGTAAATAATGAAATTGATAAAGAAGGCAATGAAACTGCAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTAGTGAAGGATGAGCTCTTACCAATGGCACAATCAAAAAATTTGACACTTGCTTTTTCATCTGAAAGCTCTATTGAGGAAGAACTGAAAAGAGAAAGTACTGCGGATGTTATTACTATATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTGGGGGATACACCCCATCCTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTCTCTGTCCTTGGATCTGTTGGAATTTTTAGTGCTCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGTGTGGATAATATGTGTATACTAGTTCATGCTGTGAAAAGGCAACAGCTGGATTTGCCTTTAGAAAGACGGATAAGCAATGCACTCGTGGAAGTTGGACCATCGATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGCCGGAAGCTTTATTTCCATGCCCGCATGTCGTGTCTTCTCCATGTTTGCAGCGTTGGCTGTACTTTTGGACTTTCTCCTGCAAGTTACTGCATTTGTAGCTCTGATAGTTCTTGACTCTTTGAGGGCAGAGGATAAGAGGGTTGATTGTTTCCCATGCATTAAAGTGCACTCTTTGCATGCAGACCCTGATAAAGGCATTGGACAAAGGAAACCTGGTCTGTTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTAAGTATTTGGGTAGTAAAAATGGTTGTCATTGCAATTTTTGTGGCATTTTCATTGGCTAGCATTGCTTTGAGCACTAGAATTGAACCTGGATTAGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAATAATATTTCGGAATATCTCAGAATTGGGCCACCTTTGTATTTTGTTGTGAAGAACTATAACTACAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATAAGCCAATGTGATTCAAACTCTCTTTTAAACGAGGTTGCTAAAGCGGCCCTAGTACCAGGCACAAGCTATATTGCCAAGCCAGCTGCTTCTTGGCTCGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCACTAATGAGAGCTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGAAGAAGGAGGCTCCTGTGTTTCAGTTGGAGTATGTAACGATTGCACAACGTGTTTCCGTCACTCAGATCTCCACAATGATCGTCCTTCCACGACACAATTTAGGGAGAAATTGCCGTGGTTTCTTAGTGCTCTTCCATCTGCTGACTGTGCAAAAGGTGGTCATGGGGCTTACACCAGCAGTGTTGAACTGAAAGGATATGACAGTGGCATTATTCAAGCATCTTCATTCCGTACATATCATACCCCACTGAACAAGCAGGTTGACTATGTTAATTCCATGAGAGCTGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTGAAGATTGAGATCTTCCCATATTCGGTGTTTTATATGTTTTTTGAGCAATACCTGAATATATGGAAAACTGCACTGGTCAACCTTGCAATAGCTATTGGTGCAGTATTCATCGTGTGCTTGGTTATCACATGCAGTTTATGGAGTTCAGCAATCATTTTGTTGGTGTTGACAATGATTGTTGTTGATCTTATGGGTGTGATGGCCATTCTGAATATCCAATTGAATGCCATCTCAGTTGTCAACCTCGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTTGCAAGTGGTGATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACATTAACAAAGTTGGTTGGAGTTATTGTTCTTTGCTTCTCGAGAACAGAAGTTTTTGTGGTTTATTACTTTCAGATGTACTTGTCATTAGTACTTCTCGGTTTTTTGCATGGTCTTGTTTTCTTACCGGTGGTATTAAGCATGTTTGGTCCACCTTCAAGATGTATCCAAGGGGCAGATCGATCTTCAACTTCTTCGTAA 3798 0.4092 MELHLHHRIGLLTLLSLLQVCLISLTEAEVLSSRLLLASNDKTPREKHSEDYCSMYDICGKRSDGKVVNCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFETLRTQVQQVIPFLVSCPACLRNFLNLFCELTCSPDQSLFINVTSVDKVGGNLTVGGIDYFVSDTFGDGLYDSCKDVKFGTTNSRAIQFVGGGARNVKEWFAFIGKKAAPNGLGSPYAITFQPNAIKSSGMEPMNVSAYSCGDISLGCSCGDCPSSSVCSNSSSATTQKKGSCSLKVGTLTVKCVDLILTVLYIILICVFLGWGLYHRVRERKPVYRAKSVSNDTNGSTLYSHNQEKEENLPMHQIIEDVSQNRNEVRLSAVQGYMSTFYRKYGLYVARNPNVVLASSLAILWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTIPDDVNSTSPRIVSEDNIKFLFEVQKKVDAIRANHSGLMVSLQDICMKPLDTNCATQSILQYFKMDPDNFDNYGGVDYLNQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIITYPVNNEIDKEGNETAKAVAWEKTFIQLVKDELLPMAQSKNLTLAFSSESSIEEELKRESTADVITILVSYLVMFAYISLTLGDTPHPSSFYISSKVLLGLSGVILVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLDLPLERRISNALVEVGPSITLASLSEVLAFAAGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHSLHADPDKGIGQRKPGLLARYMKEVHAPILSIWVVKMVVIAIFVAFSLASIALSTRIEPGLEQEIVLPRDSYLQGYFNNISEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCDSNSLLNEVAKAALVPGTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNESYCPPDDQPPCCAPEEGGSCVSVGVCNDCTTCFRHSDLHNDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDSGIIQASSFRTYHTPLNKQVDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLTMIVVDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCVHMTHSFTVASGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSMFGPPSRCIQGADRSSTSS* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0234 1265 TIGRFAM 2A060601: Niemann-Pick C type protein family 53 1249 IPR004765 GO:0005319|GO:0016021
Psa5g0234 1265 Gene3D Multidrug efflux transporter AcrB transmembrane domain 566 776 - -
Psa5g0234 1265 Pfam Patched family 1033 1248 IPR003392 GO:0016021
Psa5g0234 1265 Pfam Patched family 437 883 IPR003392 GO:0016021
Psa5g0234 1265 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1056 1253 - -
Psa5g0234 1265 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 11 1262 - -
Psa5g0234 1265 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 566 767 - -
Psa5g0234 1265 Pfam Niemann-Pick C1 N terminus 51 284 IPR032190 -
Psa5g0234 1265 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1058 1249 - -
Psa5g0234 1265 ProSiteProfiles Sterol-sensing domain (SSD) profile. 604 767 IPR000731 -
Psa5g0234 1265 PANTHER PATCHED FAMILY PROTEIN 11 1262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0234 Psa-Chr5 16746294 16762618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0234 47 1265 Miscellaneous Gene Families AT1G42470 71.383 0.0 1787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0234 K12385 - gmx:100784611 2132.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0234 5 16746294 16762618 Psa5g0234 5 16746294 16762618 ECH