Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0229 ATGGCAGCACCGAACATGGATCAGTTCGAAGCGTTTTTTAGGAGAGCAGATTTGGACGGAGATGGAAGAATCAGTGGAGCTGAGGCCGTGGGTTTCTTTCAGGGATCCAACTTGCCTAAACACGTTCTCGCTCAGGTGTGGATGCATGCTGATCAGTCCAAAACTGGTTTCCTTGGGCGGAATGATTTTTATAATGCTTTGAGATTAGTAACTGTTGCTCAGAGTAAGCGAGAATTAACTCCTGATATTGTGAAGGCGGCGTTATTTGGTCCTGCTGCTGCTAAAATCCCTCCACCACAGATCAATCTTGCTGCTTTACCTCCACAGCGTCAGAATCCAGCTGCCTCGTCTGTTGGGCAGATGGGTGTGAATGCCGCACCCACGTCTACTCAAAATCTTGCCTATAGAGGACAGGGGTTAGCAGGTTCTGCTGTGAACCCACAATATCTTCCTTCCCAACAGAATGCTAATATGAGACCACCTCAATCACAGGGATTAGCAGGTTCTGTTGCAAATGCAAACCAGCAATATCTACCTTCTCAGCAGAACGCTAATACAAGACCACCTCAATCACAGGGATTAGTGGGTTCTGTTGCAAATGCAAACCAGCAATATCTACCTTCTCAGCAGAACACGAATACAAGACCACCTCAATCACAGGGGTTAGCAGGTTCTGTTGTAAACCAGCAGTATTTACCTTCACAGCAGAGTCCTACCATGAGACCACCTCAATCACAGGGTTTTTCAGGTTTTGTTACAAGCCCACAATATCTCCCTTCCCAGCAGAGTCCTAACACGAGACCACCTCAATCACAGGGATTGCCAGGTTCTGTTGCAAATCAACAATATCTTCCTTCCCAGCAGAATCCAACCATGAGACCAACTCAATCCATGCCTGCTGGTAGTGCCCCTGGTCCACAACAATTTATGCCTGCCGGTAGTGCCCCTGGTCCACAACAATTTATGCCTGCCGGTAGTGCTCCTGGTCCACAACAATTCATGCCGCCTGGTAACACTCCTCGTCCACCTCAATCGATGCCCACTGGTACAGCCCCTCGTCCGCAACAGGGTTTTGCAGGTACCAATGTCTCAAATGCTAGCATCTCAAATGATTGGAATGGTGGAAGGACTGCCACACCTCCTTCTAGGCCTGCAGGAATCACTCAATCAGTTGCCTTACCAACACAAACATCACCGTCTCCGGTCTCACCAATGTCCCAGCCAACAGCTATTACCACTAAAGCATTGGCTGTTTCTGGAAATGGGTACCCTTCCAAATCAGCTTTGGACAGCGACTTTTTCTCTTCTGCCACATCTACACCGAAACAAGATCCTATTCGACAGAATTATCCTGTTAGCAGTGCACCTGCCTCATCGTCCATTGTTCCAGTTTCCAGTAGTGCCAACCCTGCAAGTAGGCAAAGTTCACTTGATTCATTGCAGAGTGCGTTCTCAATGGCACTTACAAATAATCAGATTCCGCGGACACAGTCTTTACCAAACACAGCCCAGCAAATTTCACCATCAGCTTCTTCTCCACTTGCAACATCTGGGAGATCAGTTGGACTTGGAAATACTACTTCTGATAATTCACAACCTCCATGGCCAAAAATGAAACCTTCTGATGTGCAAAAGTATGCAAAGGTGTTTATGGAAGTTGACACCGACAGGGATGGGAAAATCACTGGGGAGCAGGCACGCAGTCTATTTTTAAGTTGGAGATTACCGATAGATGTCTTAAAGAAGGTGTGGGACTTATCTGATCAGGATAGTGATAGCATGCTCTCTTTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAGCGGTATAGGGAAGGTCGTCCTCTTCCGCAGTCTCTTCCAAGTAATGTTATATTTGACGAAACATTGATGTCTATGACGGGGCATCCAAAAATCCCTCATGGAAATGCAGCATGGGGTGTAGGCCCAGGTTTTCAGCAGCAACAAGGAATGCCAGGTACTCGGCCAGTGGCACCAGCAGCTGGTTTGAGGCCACCTGTGCAAGGAACGCCTGCTCGGGCTGATGGCACTGTGCTGCCTGATCAGAAAACATCTGTGTTGGATGATTCCTTTTTGAATGACACAGATAATAGTAAGCAAAATATCGAGACTGCAGAGAAAAAGCCTGAAGAAATGCAGAATATGATATTGGATTCAAAAGAGAAGATTGAGTTGTACCGCAACAAAATGCAGGAATTGGTCCTGTATAAAAGCAGATGCGATAACCGCCTAAATGAGATTACAGAAAGGGCATCTGCAGATAAGCGTGAAGCAGAATCATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTTGCAGAAATAGCATCCAAATTGACTGTAGAAGAAGCTAAACTTCGTGATATACAGGAAAGGAAAACAGAGTTGCAGCAAGCCATCGTCAAAATGGAACAAGGAGGGAGTGCAGATGGCATTCTTCAGGTTCGTGCTGATCGCATACAATCAGATCTTGAGCAGTTATTTAGGGCTCTTGCTGAACGGTGCAAGAAACATGAGATAGATTTGAAGTCAATTGCTATGGTTCAGCTTCCTGATGGTTGGCAACCTGGAAATCCAGAGGGGGCAGCTGTTTGGGACGAAGATTGGGATAAGTTTGAAGATGAAGGATTTGCCAATGATCTCACTTTTGATACGAAAAATGCATCTTCAGAGCCAAAACCTTCATTCATTCCCGGAGAAAATTCCTTTGATGATAACCCAGTTCATGGTTCACCTGTGAATGCAAATGGGATGCAAGAAAATTTCACTAATGGTGATTATACAGTTGAGGAGGAATCTTCTTATGCACATAGTGAAGATGACTTGGCAAGAAGCCCTCGTGATAGCCCATTTGTAACGAGTACAGTGGAGAGTCCTTCAAACGAATTTTCAACTTCTCCTTTTGCAAAAAGTTCCGAAGCAGATGCAGAAACACACAGAAGTTTTGATGAATCAACCTGGGGTGCATTTGACAATAATGATGATGTGGATTCGGTGTGGGGTTTTAACCCCAAGGACTCCGACTTGGAGAAGCAGGGAGATTTCTTTAAATCTGGTGATTTTGGCTTAAACCCGGTTAGAACAGGATCTACATTTAATGATGGTGCTTTCCAGGCAAAAAGCCCATTTGCTTTTGACGATTCAGTGCCTGGAACTCCATTCTCCAAGTTTGGAAACTCTCCAAGGTACAGTGAGGCAGGGGATCATTTTGACACGTCAAGGTTCGATTCCTCTTTCAGCATGCATGAAAGTGGAAATTCTCCACAAGCAGAAAGATTTACGAGATTTGATTCCATTAGCAGCAGCAGGGATTTTGGCAACAATTTTGGCAATAATCACGAGAAATTTTCAAGATTTGATTCCATTAGTAGCAGCAAGGATTTTGGCTATAATCCCGATAAATTTTCAAGGTTTGATTCCATGAGTAACAGCAAAGATTTTGGTTACAATCCTGAGACGCTCACAAGGTTTGATTCCATGAGTAGCAGCAAAGATTTCGGCTTTGGTGGTGGTCAGGGACATGCAAGGTTTGACTCAATTAGTAGCAGCAAGGACTTAGGCTACAGTGCTCCATTCTCTTTTGACGACTCTGATCCATTCGGCTCTTCTGGCCCATTTAAGGTTTCTTCAGAGAATCAATCTCCAAAAAAAGGCTCTGATAAATGGAGTGCATTCTAG 3699 0.4485 MAAPNMDQFEAFFRRADLDGDGRISGAEAVGFFQGSNLPKHVLAQVWMHADQSKTGFLGRNDFYNALRLVTVAQSKRELTPDIVKAALFGPAAAKIPPPQINLAALPPQRQNPAASSVGQMGVNAAPTSTQNLAYRGQGLAGSAVNPQYLPSQQNANMRPPQSQGLAGSVANANQQYLPSQQNANTRPPQSQGLVGSVANANQQYLPSQQNTNTRPPQSQGLAGSVVNQQYLPSQQSPTMRPPQSQGFSGFVTSPQYLPSQQSPNTRPPQSQGLPGSVANQQYLPSQQNPTMRPTQSMPAGSAPGPQQFMPAGSAPGPQQFMPAGSAPGPQQFMPPGNTPRPPQSMPTGTAPRPQQGFAGTNVSNASISNDWNGGRTATPPSRPAGITQSVALPTQTSPSPVSPMSQPTAITTKALAVSGNGYPSKSALDSDFFSSATSTPKQDPIRQNYPVSSAPASSSIVPVSSSANPASRQSSLDSLQSAFSMALTNNQIPRTQSLPNTAQQISPSASSPLATSGRSVGLGNTTSDNSQPPWPKMKPSDVQKYAKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDSDSMLSLKEFCFALYLMERYREGRPLPQSLPSNVIFDETLMSMTGHPKIPHGNAAWGVGPGFQQQQGMPGTRPVAPAAGLRPPVQGTPARADGTVLPDQKTSVLDDSFLNDTDNSKQNIETAEKKPEEMQNMILDSKEKIELYRNKMQELVLYKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTVEEAKLRDIQERKTELQQAIVKMEQGGSADGILQVRADRIQSDLEQLFRALAERCKKHEIDLKSIAMVQLPDGWQPGNPEGAAVWDEDWDKFEDEGFANDLTFDTKNASSEPKPSFIPGENSFDDNPVHGSPVNANGMQENFTNGDYTVEEESSYAHSEDDLARSPRDSPFVTSTVESPSNEFSTSPFAKSSEADAETHRSFDESTWGAFDNNDDVDSVWGFNPKDSDLEKQGDFFKSGDFGLNPVRTGSTFNDGAFQAKSPFAFDDSVPGTPFSKFGNSPRYSEAGDHFDTSRFDSSFSMHESGNSPQAERFTRFDSISSSRDFGNNFGNNHEKFSRFDSISSSKDFGYNPDKFSRFDSMSNSKDFGYNPETLTRFDSMSSSKDFGFGGGQGHARFDSISSSKDLGYSAPFSFDDSDPFGSSGPFKVSSENQSPKKGSDKWSAF* 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0229 1232 MobiDBLite consensus disorder prediction 335 408 - -
Psa5g0229 1232 MobiDBLite consensus disorder prediction 955 979 - -
Psa5g0229 1232 MobiDBLite consensus disorder prediction 335 349 - -
Psa5g0229 1232 MobiDBLite consensus disorder prediction 939 953 - -
Psa5g0229 1232 SUPERFAMILY EF-hand 5 86 IPR011992 -
Psa5g0229 1232 MobiDBLite consensus disorder prediction 1210 1232 - -
Psa5g0229 1232 ProSiteProfiles EH domain profile. 542 625 IPR000261 GO:0005515
Psa5g0229 1232 CDD EH 546 612 IPR000261 GO:0005515
Psa5g0229 1232 Pfam EF hand 10 26 IPR002048 GO:0005509
Psa5g0229 1232 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Psa5g0229 1232 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 259 1136 - -
Psa5g0229 1232 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1182 1232 - -
Psa5g0229 1232 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 186 - -
Psa5g0229 1232 Pfam Cytoskeletal-regulatory complex EF hand 536 624 IPR000261 GO:0005515
Psa5g0229 1232 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Psa5g0229 1232 SMART eh_3 1 93 IPR000261 GO:0005515
Psa5g0229 1232 SMART eh_3 535 630 IPR000261 GO:0005515
Psa5g0229 1232 ProSiteProfiles EF-hand calcium-binding domain profile. 577 610 IPR002048 GO:0005509
Psa5g0229 1232 PANTHER EH DOMAIN 1 186 - -
Psa5g0229 1232 PANTHER EH DOMAIN 1182 1232 - -
Psa5g0229 1232 PANTHER EH DOMAIN 259 1136 - -
Psa5g0229 1232 CDD EH 9 75 IPR000261 GO:0005515
Psa5g0229 1232 Gene3D - 536 626 - -
Psa5g0229 1232 Gene3D - 3 102 - -
Psa5g0229 1232 ProSiteProfiles EH domain profile. 5 95 IPR000261 GO:0005515
Psa5g0229 1232 MobiDBLite consensus disorder prediction 350 408 - -
Psa5g0229 1232 SUPERFAMILY EF-hand 531 625 IPR011992 -
Psa5g0229 1232 MobiDBLite consensus disorder prediction 938 993 - -
Psa5g0229 1232 Coils Coil 786 813 - -
Psa5g0229 1232 MobiDBLite consensus disorder prediction 434 456 - -
Psa5g0229 1232 SMART efh_1 579 607 IPR002048 GO:0005509
Psa5g0229 1232 SMART efh_1 8 36 IPR002048 GO:0005509
Psa5g0229 1232 SMART efh_1 545 573 IPR002048 GO:0005509
Psa5g0229 1232 SMART efh_1 42 70 IPR002048 GO:0005509
Psa5g0229 1232 ProSiteProfiles EF-hand calcium-binding domain profile. 541 576 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0229 Psa-Chr5 16094886 16106218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0229 4 188 EF-hand Containing Proteins AT1G20760 58.602 3.70e-53 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0229 K12472 - cam:101508239 2002.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0229 5 16094886 16106218 Psa5g0229 5 16094886 16106218 ECH