Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0135 ATGTCCGGACCCCTCGATCGTTTCGCAATGCCTTGTTTTGAGGGGTTTTCCGGCAGTGATGACAAGAGAGAACGGAGATCTGATTTTGAGAACTCTGAAGATGAAAGGAGAACCAGAATTGGATCTCTGAAAAAGAAAGCGATTAATGCTTCCACTAAATTCAAGCATTCTCTTAGGAAGAAGAGTGGCAGGAGAAAGAGTGATGGACGTGTTAGCTCTGTTTCGATTGAGGATATTCGGGATGTGGAAGAGCTTCAAGCTGTCGATGGTTTTCGCCAGTCGTTGATCATGGATGAGTTGCTTCCTGATACTTTTGATGATTATCATATGATGTTAAGATTTTTGAAAGCGAGGAAATTTGATATTGAAAAAGCTAAGCATATGTGGGCTGACATGCTACAATGGAGGAGAGAGTTTGGTGCTGACACCATTATGCAGGATTTTGAGTTCAAAGAGTTAAATGAAGTTGTGAAATATTACCCACATGGCCATCATGGTGTAGATAGGGAGGGAAGGCCTGTGTATATTGAAAGGCTTGGAAAAGTTGATCCGAACAAGCTTATGCAAGTTACAACTATGGATAGATATGTAAAGTACCACGTGCAAGAGTTTGAGAAATCTTTTGCAATAAAGTTTCCTGCTTGCACTATTGCTGCCAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGAGTGGGGCTTAAGAATTTTACTAAGTCAGCCCGGGATCTCGTCATGCGATTGCAGAAGGTCGAGGTGACAATTACCCTGAGACACTCTGCCAAATGTTTATTATAA 807 0.4164 MSGPLDRFAMPCFEGFSGSDDKRERRSDFENSEDERRTRIGSLKKKAINASTKFKHSLRKKSGRRKSDGRVSSVSIEDIRDVEELQAVDGFRQSLIMDELLPDTFDDYHMMLRFLKARKFDIEKAKHMWADMLQWRREFGADTIMQDFEFKELNEVVKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARDLVMRLQKVEVTITLRHSAKCLL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0135 268 Pfam CRAL/TRIO domain 159 248 IPR001251 -
Psa5g0135 268 SUPERFAMILY CRAL/TRIO domain 152 253 IPR036865 -
Psa5g0135 268 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Psa5g0135 268 MobiDBLite consensus disorder prediction 1 42 - -
Psa5g0135 268 CDD SEC14 150 254 IPR001251 -
Psa5g0135 268 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 268 IPR001251 -
Psa5g0135 268 Gene3D - 140 255 IPR036865 -
Psa5g0135 268 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Psa5g0135 268 Gene3D - 76 139 - -
Psa5g0135 268 Pfam CRAL/TRIO, N-terminal domain 109 131 IPR011074 -
Psa5g0135 268 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 3 255 - -
Psa5g0135 268 MobiDBLite consensus disorder prediction 17 42 - -
Psa5g0135 268 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0135 Psa-Chr5 8053364 8054842 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0135 86 242 Acyl Lipid Metabolism Gene Families AT5G47730 26.786 4.80e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0135 - - mnt:21392105 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0135 5 8053364 8054842 Psa5g0135 5 8053364 8054842 ECH