Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0123 ATGTCGTTAACCGACTCCGATGATGCCGTACGACGTCGTAACAATGCCGTCAAAGATTATCGCAGAAAGCTTCTCAATCACAAGGAACTTGATTCCAGAATTCGATCAGTTAGAGACAAATTGCGGAATGCGAAGAAGGATTTCAATAAAACAGAGGATGATTTGAAGTCTTTTCAGAGTGTTGGACAAATTGTTGGCGAGGTTCTCAGACCTCTTGATGATCAACGCATGATTGTTAAAGCGAGCAGTGGACCAAGGTATGTTGTGGGCTGTCGTAGTAAGGTGGACAAGGAGAAGCTGGCTTCAGGAACTCGAGTTGTGCTGGATATGACTACACTAACCATTATGCGAATTCTTCCCCGTGAAGTTGACCCAGTTGTATATAATATGCTACATGAAGACCCTGGAAATGTTAGCTACTCTGCAGTTGGAGGGCTTTCAGATCAGATTCGAGAACTAAGGGAATCAATTGAACTTCCTCTAATGAATCCTGAGCTTTTTCTTAGGGTTGGAATCAAACCACCGAAGGGTGTTCTTCTCTATGGACCTCCTGGTACTGGGAAGACATTATTAGCAAGAGCAATTGCCAGCAATATTGAAGCTAACTTCTTGAAGGTTGTATCCAGTGCTATAATTGACAAGTATATTGGTGAAAGTTCAAGACTGATTAGGGAAATGTTTGGATATGCTCGTGAGCATCAGCCTTGCATCATATTCATGGATGAGATTGATGCCATTGGTGGACGGCGTTTCAGTGAAGGAACAAGTGCTGATCGTGAAATTCAAAGAACCCTCATGGAGCTTCTTAACCAGCTAGATGGATTTGATCAGCTTGGAAAGGTTAAAATTATTATGGCTACAAATAGGCCTGATGTTCTTGACCCTGCCCTTCTTCGCCCGGGTCGACTTGATCGGAAAATTGAGATTCCATTACCAAATGAGCAGTCCAGGATGGAAGTCCTCAAAATCCATGCTGCTGGAATTGCAAAGCATGGTGAAATTGACTATGAAGCAGTTGTTAAGCTTGCTGAGGGGTTCAATGGTGCTGATCTTCGTAATGTTTGCACTGAAGCTGGGATGGCTGCCATTCGTGCAGAACGTGATTATGTAATTCATGAAGATTTCATGAAGGCCGTCCGCAAATTGACTGAAGCAAAGAAACTGGAAGCAAGCGCTCATTACAATGCGGATTTCGGGAAAGATTAA 1206 0.432 MSLTDSDDAVRRRNNAVKDYRRKLLNHKELDSRIRSVRDKLRNAKKDFNKTEDDLKSFQSVGQIVGEVLRPLDDQRMIVKASSGPRYVVGCRSKVDKEKLASGTRVVLDMTTLTIMRILPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESSRLIREMFGYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLTEAKKLEASAHYNADFGKD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0123 401 CDD AAA 144 311 - -
Psa5g0123 401 Coils Coil 27 61 - -
Psa5g0123 401 Pfam ATPase family associated with various cellular activities (AAA) 178 311 IPR003959 GO:0005524|GO:0016887
Psa5g0123 401 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 397 - -
Psa5g0123 401 Pfam Proteasomal ATPase OB C-terminal domain 65 120 IPR032501 -
Psa5g0123 401 ProSitePatterns AAA-protein family signature. 281 299 IPR003960 GO:0005524|GO:0016887
Psa5g0123 401 Gene3D - 131 311 IPR027417 -
Psa5g0123 401 Pfam AAA+ lid domain 334 376 IPR041569 -
Psa5g0123 401 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 27 382 IPR005937 GO:0005737|GO:0030163|GO:0036402
Psa5g0123 401 SMART AAA_5 174 313 IPR003593 -
Psa5g0123 401 Gene3D - 26 130 IPR012340 -
Psa5g0123 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 386 IPR027417 -
Psa5g0123 401 PANTHER BNAC02G30020D PROTEIN 6 397 - -
Psa5g0123 401 Gene3D - 312 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0123 Psa-Chr5 7507938 7511722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0123 137 381 Miscellaneous Gene Families AT3G47060 39.200 1.65e-53 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0123 K03064 - vvi:100252341 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0123 5 7507938 7511722 Psa5g0123 5 7507938 7511722 ECH