Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0106 ATGAGTTCAGACAGCCGCAGCCGAAGCCGAAGCAGGAGTAGGAGTCGTAGCCCAGGGATCCGTAAGATTCGCTCTGATCGACATTCCTATCGTGATGCTCCTTACAGGAGAGATTCAAGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGACCTGGTCACTATGCTAGAGAGTGCCCTAATGTTGCAGTTTGCCACAATTGTGGCCTTCCTGGGCACATTGCTTCTGAATGCTCCACAAAATCAGTGTGCTGGAATTGCAAAGAACCTGGCCACATGGCCAGCAGTCCAAATGAGGGCATTTGCCACACCTGGGGGCACATTGCTGTTGAATGCACGAATGAGAAGGCTTGCAGTAGGAAAACAGGGCACTTGGCACGTGATTGTCCAAATGACCCAATTTGCAATGTCTGCAATGTTTCTGGACATGTGGCTAGACAATGTCCAAAATCAAACATTATTGGAGATCACAGTGGCAGAGGCAGCTTCCGTGGTGCTGGTGGAGCGGGTGGTGGTGGTTACCGTGATGTCGTATGCAGGAACTGTCAACAGTTGGGTCATATGAGCCGTGACTGCATGGGCCCCTTGATGATTTGTCACAATTGTGGAGGCCGTGGTCACTTGGCATATGAGTGTCCTTCAGGTCGCTTTATGGATCGCTACCCTAGTGATCGGTACCCTGGTGATCGCTACCCTAGTAGGAGATACTAG 720 0.5083 MSSDSRSRSRSRSRSRSPGIRKIRSDRHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSVCWNCKEPGHMASSPNEGICHTWGHIAVECTNEKACSRKTGHLARDCPNDPICNVCNVSGHVARQCPKSNIIGDHSGRGSFRGAGGAGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPSDRYPGDRYPSRRY* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0106 239 SUPERFAMILY Retrovirus zinc finger-like domains 85 119 IPR036875 GO:0003676|GO:0008270
Psa5g0106 239 MobiDBLite consensus disorder prediction 19 39 - -
Psa5g0106 239 SUPERFAMILY Retrovirus zinc finger-like domains 40 84 IPR036875 GO:0003676|GO:0008270
Psa5g0106 239 PANTHER OS10G0545300 PROTEIN 5 109 - -
Psa5g0106 239 PANTHER OS10G0545300 PROTEIN 109 228 - -
Psa5g0106 239 Gene3D - 24 65 - -
Psa5g0106 239 ProSiteProfiles Zinc finger CCHC-type profile. 202 217 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 ProSiteProfiles Zinc finger CCHC-type profile. 138 153 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SUPERFAMILY Retrovirus zinc finger-like domains 123 155 IPR036875 GO:0003676|GO:0008270
Psa5g0106 239 PANTHER - 5 109 - -
Psa5g0106 239 PANTHER - 109 228 - -
Psa5g0106 239 ProSiteProfiles Zinc finger CCHC-type profile. 49 64 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SUPERFAMILY Retrovirus zinc finger-like domains 174 219 IPR036875 GO:0003676|GO:0008270
Psa5g0106 239 Gene3D - 66 103 - -
Psa5g0106 239 Pfam Zinc knuckle 86 98 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 Pfam Zinc knuckle 181 195 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 Pfam Zinc knuckle 137 153 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 Pfam Zinc knuckle 201 217 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 Pfam Zinc knuckle 67 82 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 Pfam Zinc knuckle 48 64 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 ProSiteProfiles Zinc finger CCHC-type profile. 68 81 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 Gene3D - 120 155 - -
Psa5g0106 239 Gene3D - 176 219 - -
Psa5g0106 239 ProSiteProfiles Zinc finger CCHC-type profile. 182 195 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 MobiDBLite consensus disorder prediction 1 39 - -
Psa5g0106 239 SMART c2hcfinal6 120 134 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 104 117 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 86 101 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 67 83 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Psa5g0106 239 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0106 Psa-Chr5 5824448 5828107 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0106 K09250 - gmx:100803820 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0106 5 5824448 5828107 Psa5g0106 5 5824448 5828107 ECH