Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0047 ATGGCTGCTTCGGGTATCGCTGGAGCAGGGCTTACCCTTCTCAACCGCTTCTCCTCTTCCGCTTCTTCTTCTTCAACTCGATGTCGTACTCGTTCTCTAACTATGGCTGTTTCCACCGACCAGAAACCCAAAACCACCGAAAAACTCACTCTCCGCAAGTCCGAAGAAGCTTTCGCCGCTGCAAAGGAATTGATGCCTGGAGGAGTTAACTCTCCCGTTCGTGCGTTCAAATCAGTTGGTGGACAACCCATTATCATTGACTCAGTTAAAGGCTCTCGGATGTGGGACATTGATGGCAACGAATATATTGACTACGTTGGTTCTTGGGGTCCTGCAATTATCGGTCACGCCGATGATCAGGTTCTTGCTGCTCTGGGGGAAACAATGAAGAAAGGAACCAGTTTTGGTGCACCTTGTCTATTGGAGAACACGTTAGCAGAGATGGTTATCGCTGCTGTTCCCAGCATTGAAATGGTGAGATTTGTGAATTCGGGAACGGAAGCGTGCATGGGTGCACTCCGTCTGGCGCGTGCTTTTACTGGGAAGGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGACACGCGGATCCTTTTCTGGTTAAGGCTGGCAGTGGAGTTGCCACCCTAGGACTTCCGGATTCACCTGGTGTTCCTAAAGCTGCTACCAATGAAACGCTAACGGCCCCTTTCAATGATTTTGCTGCTGTTGAGAAGATCTTTGAGGACAACAAAGGAGAGATAGCTGTTGTTTTTCTTGAACCTGTTGTTGGAAATGCCGGTTTCATTACGCCTAAACCTGATTTTCTTAGTTCGTTGCGCAAAATTACTAAGGAAAATAATGCCCTTCTTGTGTTTGATGAAGTTATGACTGGATTTCGTTTGTCGTATGGAGGTGCTCAAGAATATTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGGGGTTTGCCGGTGGGTGCATATGGAGGTAGGAGGGATATTATGGAGACGGTGGCTCCGGCTGGACCTATGTACCAGGCCGGGACATTGAGCGGGAACCCTTTGGCCATGACTGCAGGCATACAGACTCTGAAGCGAATTAAAGAGGCAGGAACTTACGAATACTTGGACAACATTACAGGTGAGCTTGTTCAAGGAATTGTTGAAGCTGGGAAGAAGGCAGGGCACGCAATTTGTGGCGGGCATATAAATGGGATGTTTGGATTTTTCTTCACAGAAGGACCCGTGTACAATTTCACAGATGCAAAAAAGAGTGACACTGCTAAGTTTGCTAAGTTTTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACCAGCTTGGCACATACTTCTGATGACATCAAAAAAACTATAGCTGCTGCTGAGAGGGTCTTCAGGGAAATCTGA 1428 0.472 MAASGIAGAGLTLLNRFSSSASSSSTRCRTRSLTMAVSTDQKPKTTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLAEMVIAAVPSIEMVRFVNSGTEACMGALRLARAFTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEDNKGEIAVVFLEPVVGNAGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIQTLKRIKEAGTYEYLDNITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAERVFREI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0047 475 Gene3D Aspartate Aminotransferase, domain 1 56 468 IPR015422 GO:0003824
Psa5g0047 475 Gene3D - 119 367 IPR015421 GO:0003824
Psa5g0047 475 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 19 473 - -
Psa5g0047 475 Pfam Aminotransferase class-III 83 394 IPR005814 GO:0008483|GO:0030170
Psa5g0047 475 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 53 475 IPR004639 GO:0033014|GO:0042286
Psa5g0047 475 SUPERFAMILY PLP-dependent transferases 52 474 IPR015424 -
Psa5g0047 475 PANTHER BNAA09G06670D PROTEIN 19 473 - -
Psa5g0047 475 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 284 320 IPR005814 GO:0008483|GO:0030170
Psa5g0047 475 CDD OAT_like 58 472 IPR005814 GO:0008483|GO:0030170
Psa5g0047 475 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 53 474 IPR004639 GO:0033014|GO:0042286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0047 Psa-Chr5 2173344 2175624 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0047 K01845 - gmx:547795 822.387