Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0028 ATGAGAAAGACGAAGAAAAGTAGCAGTACTACGTCAGATTCAGAGTATTGTCAACAACAACAACCAGGTTTTACTGCTGCGGCGGAAGAACAAACAACTTCTCCTCCTCCTAAGCTTGACGATGGTTTCTATGAAATTGAAAGGATTCGCCGTAAGAGGATCAGAAAGGGTGAGCTCCAGTACCTTATTAAATGGCGAGGATGGCCGGAAACTGCCAACACCTGGGAGCCTCTTCAAAATCTACAATCTGTTCCCGATCTCATTCATGCATTTGAAGAAAGCCTCAAATCAGGCGGTGCTGGAGGAGGCGGAAATCATCATCGCAGCAAGGGAAAACGCACCACCACCCTTCCACCTCACCCTCAGCCACCACAACCTACTAACGCCCATCCTCCCACCGTCCTTCAAAATCCACCATCTACGGACACTGGCCTCCATGCAGACAACCTAGCAACACATTTCCAACAGACTGTCATTTCAACGCCCAATGATGCTCAATCGAACGGGAACGGGGATCCGCTTCAAACGGACCGCACCAGAGGAGCCAAAAGGAGAAAACCTGCTTCTGTTAAAAGGTTCAAGAAAGAGGAATGTGCATCTGAAACTGTTGTTGATACAAACAATGCAGCTGCCAATGACGTCTCTGCTGGTGGTAAGCTTGAACCGGCCTGGACACAAAATGCATGCAATATTGTCAAGATTCTAAAGCCAATAGGCTATTCAGCTTCTCTATCTTCCTACATGCAGGATGTTTCAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTGGATAACAAATATCTCAAGACAAACAATCCTCTTCTGCTGATCAATTTCTATGAGCAGCATCTCCGATACAATCCAAGTTCTTAA 885 0.4633 MRKTKKSSSTTSDSEYCQQQQPGFTAAAEEQTTSPPPKLDDGFYEIERIRRKRIRKGELQYLIKWRGWPETANTWEPLQNLQSVPDLIHAFEESLKSGGAGGGGNHHRSKGKRTTTLPPHPQPPQPTNAHPPTVLQNPPSTDTGLHADNLATHFQQTVISTPNDAQSNGNGDPLQTDRTRGAKRRKPASVKRFKKEECASETVVDTNNAAANDVSAGGKLEPAWTQNACNIVKILKPIGYSASLSSYMQDVSVTFMAMRSDGTEVMVDNKYLKTNNPLLLINFYEQHLRYNPSS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0028 294 ProSiteProfiles Chromo and chromo shadow domain profile. 44 93 IPR000953 -
Psa5g0028 294 SMART ChS_2 220 293 IPR008251 GO:0005634
Psa5g0028 294 MobiDBLite consensus disorder prediction 10 32 - -
Psa5g0028 294 MobiDBLite consensus disorder prediction 98 130 - -
Psa5g0028 294 CDD CD_CSD 57 93 - -
Psa5g0028 294 MobiDBLite consensus disorder prediction 160 194 - -
Psa5g0028 294 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 143 293 - -
Psa5g0028 294 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 19 122 - -
Psa5g0028 294 SUPERFAMILY Chromo domain-like 32 96 IPR016197 -
Psa5g0028 294 SMART chromo_7 43 96 IPR000953 -
Psa5g0028 294 MobiDBLite consensus disorder prediction 160 175 - -
Psa5g0028 294 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 143 293 IPR044251 GO:0006325|GO:0031507
Psa5g0028 294 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 19 122 IPR044251 GO:0006325|GO:0031507
Psa5g0028 294 ProSitePatterns Chromo domain signature. 61 81 IPR023779 -
Psa5g0028 294 Gene3D - 27 96 - -
Psa5g0028 294 PRINTS Chromodomain signature 41 49 IPR017984 -
Psa5g0028 294 PRINTS Chromodomain signature 54 68 IPR017984 -
Psa5g0028 294 PRINTS Chromodomain signature 69 81 IPR017984 -
Psa5g0028 294 MobiDBLite consensus disorder prediction 1 44 - -
Psa5g0028 294 Pfam Chromo (CHRromatin Organisation MOdifier) domain 44 93 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0028 Psa-Chr5 1686750 1690525 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0028 - - cam:101503633 289.271