Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0027 ATGTCTTGTTTATTGCCGCACTTTAACACTTTCACAACTCCTATCCCTATCCCCATCTCTACACACCGCCATCATCATATCATTCTTCAAACTAAATCAAGACGCAATTTCTATTTACGCCCGCACTGTATTCTGTCTCCTTCCGCACCATCAACCGCACTCCTTGAGTTCGATACTAATCAATTTCATGCTGCAAACACACCTTGGCCCTATGTAGCTTCTCAGGAAAACTATAAAGCAGCCACTTCTGCGGAATCACTTCTTGCCAGTGAAGACGCCGTTATAGCTGCTGCTGCTTCTGAAGCGATTGCTCTCGCTAAAGCTGCGGCAAAACTTGCAAAGGATGCCGCCTTATTAGTAAAACATAATTCCCCACAACAACAACCGGTGGTTAGGCCACAGCCTCCTTCCAAGCCTGAAAATTTACTTCTCAAATGGCTTCAACACATGGAAGCACAAGATGCTGTAGCAGAAGGACCACAGATAATGGAAGATGTTGACACTAGCTCAACTCAAGAGGAGGAGTTGGAGGATGAGGAACCTACCTCTGAGGAACTTGAAGTTGCCGAGGAAGAACTTTCCGATAGTATAGATGCAAGATCGGGCCGGCAGACAGAAAGAAAAGCCAGAAGAGTCAGGGCATGTGGGAAGGCTGCCACTAATATCGTGTCCTTTAAGTCTGGATCCATCAGTAGAAAAAAGCGTGTTCGGACACAAGAGATTGACTATTCTGATCCACTTCGTTACTTAAGAAATACAACCAGATCTACAAAGCTTCTTACTATATCTGAAGAAGTTAAGTTGTCTGCAGGAATACAGGATCTGATAACGCTCGAAAGACTACAAGAGGATCTTGCAGAAAAATCTGGTGGCAAGCCCACATTTTCTCAATGGGCTACAATGGCAGGGGTAGATCAGAAGACCCTAAGAAAACGATTAAATTATGGTGTATTTTGCAAAGAAAAAATGGTTAAAAGCAATATACGACTTGTCATATCAATTGCTAAGAATTACCAGGGATCTGGGATGAGTCTGCAAGATCTAGTCCAGGAAGGGTGCCGCGGTCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGCTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCCCTTTCTGCCCAGTCTAGAATTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAAGGCGGCACAGAAACAGTTGTACAGTGAAAATGGAAGACAACCAGACGATGCAGAAGTTGCTGAAGCAACTGGGCTGTCAATGAAGAGGCTTAATGCTGTTTATATGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAATTGGGATCAACCAGAGTCTTAAACCTTCAGAAGTACTTGCTGATCCGGAAGCTGAAACACCTGAAGAACAACTCATTAAGCAGTTCATGAAAAAGGACCTAGAAAAGGTACTAGACAGCCTGAATCCAAGAGAGAAACAGGTGATTAGATTGAGATTTGGTATGGACGATGGAAAGATGAAGACACTGCAAGAGATTGGGGAAATAATAGGCGTGAGTAGGGAGAGAGTTAGACAAATTGAGTCATGTGGTTTTAGGAGGCTTAAGAACAAGAAGAGAGCCAAACATTTGGAGCATTATTTGAATTTATAA 1674 0.4337 MSCLLPHFNTFTTPIPIPISTHRHHHIILQTKSRRNFYLRPHCILSPSAPSTALLEFDTNQFHAANTPWPYVASQENYKAATSAESLLASEDAVIAAAASEAIALAKAAAKLAKDAALLVKHNSPQQQPVVRPQPPSKPENLLLKWLQHMEAQDAVAEGPQIMEDVDTSSTQEEELEDEEPTSEELEVAEEELSDSIDARSGRQTERKARRVRACGKAATNIVSFKSGSISRKKRVRTQEIDYSDPLRYLRNTTRSTKLLTISEEVKLSAGIQDLITLERLQEDLAEKSGGKPTFSQWATMAGVDQKTLRKRLNYGVFCKEKMVKSNIRLVISIAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSAQSRIIRLPFHMVGATYKVKAAQKQLYSENGRQPDDAEVAEATGLSMKRLNAVYMTPKAPRSLEQKIGINQSLKPSEVLADPEAETPEEQLIKQFMKKDLEKVLDSLNPREKQVIRLRFGMDDGKMKTLQEIGEIIGVSRERVRQIESCGFRRLKNKKRAKHLEHYLNL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0027 557 PIRSF Sigma_factor_SigC 16 557 IPR016262 -
Psa5g0027 557 ProSitePatterns Sigma-70 factors family signature 2. 516 542 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 30 555 - -
Psa5g0027 557 Gene3D - 396 473 IPR036388 -
Psa5g0027 557 MobiDBLite consensus disorder prediction 193 211 - -
Psa5g0027 557 Pfam Sigma-70 region 3 404 478 IPR007624 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 MobiDBLite consensus disorder prediction 168 192 - -
Psa5g0027 557 CDD Sigma70_r4 485 543 - -
Psa5g0027 557 Gene3D - 477 557 IPR036388 -
Psa5g0027 557 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 30 555 - -
Psa5g0027 557 Pfam Sigma-70, region 4 491 543 IPR007630 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 PRINTS Major sigma-70 factor signature 347 360 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 PRINTS Major sigma-70 factor signature 371 379 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 PRINTS Major sigma-70 factor signature 495 507 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 PRINTS Major sigma-70 factor signature 516 531 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 PRINTS Major sigma-70 factor signature 531 542 IPR000943 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 MobiDBLite consensus disorder prediction 167 211 - -
Psa5g0027 557 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 455 555 IPR013324 -
Psa5g0027 557 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 321 545 IPR014284 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 Gene3D RNA Polymerase Primary Sigma Factor 141 395 - -
Psa5g0027 557 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 391 440 IPR013324 -
Psa5g0027 557 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 244 392 IPR013325 GO:0003700|GO:0006352|GO:0006355
Psa5g0027 557 Pfam Sigma-70 region 2 323 392 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0027 Psa-Chr5 1666910 1671386 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0027 - - aprc:113864822 676.011