Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0022 ATGGAAGGATTGGCAGTTCAGCTCCCACGGCTCCTTCCATTCCCGCTTCCTAAATATGCCGTACCGTTTTCTACTTCCAATTCCACCTCCACCTCCACCGGATTTATTTCTCTCAAACAACTACAACTATCTCCACGTCCTCCTCGTTTTCCCTTTTGTACACCATCATCTCATTCCCAGCCTCAACCCGAACAACTCACCGTCGTCGATAATTCTGTCACCGGTGATTCAATACGCCAAAGATTTCTCGCTTTTTATGCTTCCCGTGGTCACAAGGTCCTTCCTAGTGCTTCTTTAGTCCCAGATGACCCCACTGTTCTCCTCACTATCGCTGGAATGCTTCAATTCAAACCCATCTTCCTCGCAAAGGTTCCTAGACAAGTCCCTCGTGCCACTACTGCACAAAGGTGCATCCGTACCAATGATATCAACAACGTTGGCCAAACCTCACGCCATCATACCTTCTTTGAGATGCTTGGAAACTTCAGCTTTGGTGATTACTTTAAAAAACAAGCTATTCAATGGGCATGGGACCTATCTACCGTTGAGTTCGGTTTGCCTCCGGAGAGATTATGGATTAGTGTATATCAAGACGATGATGAAACTTTTCAGTTCTGGTCTCAACAGGTTGGTGTCCCCGTTGAGCGAATTAAGAGGTTGGGTGAAGATGACAATTTTTGGACCAGTGGAGCAACAGGTCCCTGCGGTCCGTGCTCCGAAATTTATTATGATTTTCATCCCGAGAGGGGATATGACGATGCCGATCTTGGCGATGATACACGGTTTATAGAGTTTTACAATCTAGTATTCATGCAATACAACAAAAAAGACGATGGTTCTCTTGAACCACTAAAGCAGATGAACATAGATACTGGCCTCGGTCTCGAGCGCATGGCTCGCATTCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTCTCCCCATTATAGAGAAGGCATCTGAATTAGCAAATGTTTCATATGGAATTTCGGATGATCAGACCAAGAGGTATCTGAGAATTGTAGGGGATCACATGCGTGCAATTGTGTTTCTCATATCGGATGGTGTCGTCCCATCAAATGTTGGGAGAGGTTATGTTGTTCGGCGACTTATCAGAAGGGTTGTTCGCACAAGCAGGTTGCTTGGTATAAAAGGGGATGGTAGAGGAGACCTTGAAGGAGCTTTTTTACCTATCATTGCCGAGAAAGTAGTAGAATTAAGTACGCACATTGATGCTGATGTGAAGAACAGAGCACCCCGTATCCTCGAGGAGTTGAAGAGAGAAGAGCTTCGGTTTGTTCAGACACTTGAGAGAGGGGAAAAGTTGCTTGAGGAGAAGCTTGCTGATGCTATATCAACTGCTGAAAGAAATGGAACCGTGCCTTGCTTGGCTGGTGAAGATGTGTTCATTTTGTATGATACTTATGGTTTCCCAATGGAAATAACAAAAGAAGTGGCTGAAGAGCGTGGTGTGAGTATTGACATGAATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGGCAGTCTCAAGCCGCACACAATACTGTCAAGCTTGCCGTTGGAAGTGGGACAAATATTGCAGACAGTGTACCTGACACTGAATTTATTGGATATGATAGTCTTTATTGTAAAGCCATCATAGCAAGCCTAGTGGTAAATGGTGATCCAGCTGTACGTGTTAGTGAAGGGAGTAATGTAGAGATTTTGCTGAACAAGACTCCATTTTATGCTGAATCTGGAGGACAAATTGGAGATCATGGTTTTCTATATATTTCACAGGGTGAGAATCAACCTAAAGCTGTTGTGGAAATAATAGATGTTCAGAAGTCTTTTGGTAATATATTTGTTCACAAGGGCACAGTCCATAAGGGTGCTGTAGAGGTTGGCAAACAAGTGGAAGCAACAGTAGATGTTAAGTTGAGGCAACGAGCCCAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAAGTCATTGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTGGCTTTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGTCCACTTCTTGACAGCGAGCTTGTAGAAATTGAAGTGCTGATCAACGGATGGGTTGAGGATGCAATTCTCCTTCAGACCAAAGTGATGCCCATTGCTGATGCAAAAAGGGAAGGAGCAATTGCAATGTTTGGAGAAAAGTATGGTGAAGAGGTTGGATTTACTACAAACACTTTTGATATTAACTTTGAAATTCTTTTAGCTTGCTTCTGTTTTGGTAGTTCGAAGTATTTAGATTACACATACCTCAAAGTGTGTACTTCAAAAGAGGCCAGAAATTTGACGTTCAGGGGTGGTTTACAAGTAATATTCAGGAATCATCGTGTCTTTGGATTCAATTTCTGTCATCAGTACTACCATTGGTAG 2427 0.4314 MEGLAVQLPRLLPFPLPKYAVPFSTSNSTSTSTGFISLKQLQLSPRPPRFPFCTPSSHSQPQPEQLTVVDNSVTGDSIRQRFLAFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLAKVPRQVPRATTAQRCIRTNDINNVGQTSRHHTFFEMLGNFSFGDYFKKQAIQWAWDLSTVEFGLPPERLWISVYQDDDETFQFWSQQVGVPVERIKRLGEDDNFWTSGATGPCGPCSEIYYDFHPERGYDDADLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLILPIIEKASELANVSYGISDDQTKRYLRIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTSRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIDADVKNRAPRILEELKREELRFVQTLERGEKLLEEKLADAISTAERNGTVPCLAGEDVFILYDTYGFPMEITKEVAEERGVSIDMNGFDIEMEKQRRQSQAAHNTVKLAVGSGTNIADSVPDTEFIGYDSLYCKAIIASLVVNGDPAVRVSEGSNVEILLNKTPFYAESGGQIGDHGFLYISQGENQPKAVVEIIDVQKSFGNIFVHKGTVHKGAVEVGKQVEATVDVKLRQRAQVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELVEIEVLINGWVEDAILLQTKVMPIADAKREGAIAMFGEKYGEEVGFTTNTFDINFEILLACFCFGSSKYLDYTYLKVCTSKEARNLTFRGGLQVIFRNHRVFGFNFCHQYYHW* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0022 808 Pfam tRNA synthetases class II (A) 78 640 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Psa5g0022 808 SUPERFAMILY ThrRS/AlaRS common domain 638 741 IPR018163 GO:0000166
Psa5g0022 808 TIGRFAM alaS: alanine--tRNA ligase 78 739 IPR002318 GO:0000166|GO:0005737
Psa5g0022 808 PRINTS Alanyl-tRNA synthetase signature 141 152 IPR002318 GO:0000166|GO:0005737
Psa5g0022 808 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Psa5g0022 808 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Psa5g0022 808 PRINTS Alanyl-tRNA synthetase signature 341 357 IPR002318 GO:0000166|GO:0005737
Psa5g0022 808 PRINTS Alanyl-tRNA synthetase signature 365 378 IPR002318 GO:0000166|GO:0005737
Psa5g0022 808 SUPERFAMILY Class II aaRS and biotin synthetases 74 309 IPR045864 -
Psa5g0022 808 Hamap Alanine--tRNA ligase [alaS]. 74 808 IPR023033 GO:0004813
Psa5g0022 808 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 518 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Psa5g0022 808 CDD AlaRS_core 76 305 - -
Psa5g0022 808 Gene3D Bira Bifunctional Protein; Domain 2 73 306 IPR045864 -
Psa5g0022 808 SUPERFAMILY Translation proteins 533 638 IPR009000 -
Psa5g0022 808 Gene3D - 639 732 - -
Psa5g0022 808 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 73 761 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Psa5g0022 808 Gene3D - 525 638 - -
Psa5g0022 808 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 74 739 - -
Psa5g0022 808 PANTHER ALANYL-TRNA SYNTHETASE 74 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0022 Psa-Chr5 1482410 1485990 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0022 K01872 - gmx:100788288 1191.79