Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0020 ATGAGCAAGTTAAGAATCCCAATACTACTAGTACTATTTATAGTCTCCTGCTGCTCAGCAGAGCAATGCGGAACACAAGCTGGGGGTGCTTTGTGCCCCGGTGGATTATGCTGCAGCAAATTCGGTTGGTGCGGTTCAACCTCCGAATACTGCGGTGATGGTTGCCAGAGTCAGTGTAGTGGAAGCAGCGGCGGCGGCACCCTTTCTAGCCTCATCTCCGGTGACACCTTCAACAACATGCTCAAACATCGCAATGATAATGCTTGTCAAGGGAAAGGCTTTTACACCTACGACGCTTTCCTTTCAGCTGCAAAGGCTTTCCCCAACTTCGCCAATAAAGGAGATACCGCCACTAAAAAAAGAGAAATCGCTGCTTTCTTAGGTCAAACTTCTCACGAAACCACCGGTGGATGGCCAACTGCACCCGATGGTCCCTACGCTTGGGGATACTGCTTTCTCAGAGAACAGAATCCCAGCACCTACTGCCAAGCAAGCTCTGAATTTCCATGTGCTTCTGGAAAACAATACTACGGTAGAGGTCCCATTCAGATCTCATGGAATTACAACTACGGACAGTGTGGAAGAGCGATTGGTGTTGACTTGCTCAATAATCCAGACCTCGTCGCTACTGATCCTGTTATATCCTTCAAGACCGCTTTATGGTTCTGGATGACGCCTCAGTCACCTAAACCATCCTGCCACGACGTTATCACCGGAGGGTGGACTCCGTCGAGTGCTGATCGTGCGGCGGGGAGGCTTCCCGGATACGGAACAGTGACGAACATCATAAACGGAGGACTTGAATGCGGGAGAGGACAGGATAGTAGAGTGCAGGATCGGATTGGATTTTACAAGAGATACTGTGACATATTTGGAATTGGATACGGAGATAATCTTGACTGTTACTCTCAGAGGCCATTCGGATCTTCACTCTCGTTGTCATCAATCCTTCTCGACACCATCGCAGCAGCCTAG 975 0.4944 MSKLRIPILLVLFIVSCCSAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCSGSSGGGTLSSLISGDTFNNMLKHRNDNACQGKGFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLSLSSILLDTIAAA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0020 324 CDD ChtBD1_GH19_hevein 21 53 - -
Psa5g0020 324 ProSitePatterns Chitinases family 19 signature 2. 214 224 IPR000726 GO:0004568|GO:0006032|GO:0016998
Psa5g0020 324 ProSitePatterns Chitinases family 19 signature 1. 89 111 IPR000726 GO:0004568|GO:0006032|GO:0016998
Psa5g0020 324 Pfam Chitin recognition protein 22 59 IPR001002 GO:0008061
Psa5g0020 324 PIRSF Endochitinase 1 308 IPR016283 GO:0004568|GO:0005975
Psa5g0020 324 Gene3D - 71 302 - -
Psa5g0020 324 Gene3D Endochitinase, domain 2 154 210 - -
Psa5g0020 324 SMART ChitinBD_3 22 59 IPR001002 GO:0008061
Psa5g0020 324 Gene3D - 20 62 IPR036861 GO:0008061
Psa5g0020 324 ProSiteProfiles Chitin-binding type-1 domain profile. 20 61 IPR001002 GO:0008061
Psa5g0020 324 Pfam Chitinase class I 71 301 IPR000726 GO:0004568|GO:0006032|GO:0016998
Psa5g0020 324 PANTHER CHITINASE-RELATED 9 310 - -
Psa5g0020 324 PANTHER CHITINASE 2 9 310 - -
Psa5g0020 324 SUPERFAMILY Plant lectins/antimicrobial peptides 22 62 IPR036861 GO:0008061
Psa5g0020 324 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Psa5g0020 324 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Psa5g0020 324 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Psa5g0020 324 SUPERFAMILY Lysozyme-like 68 308 IPR023346 -
Psa5g0020 324 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Psa5g0020 324 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Psa5g0020 324 CDD chitinase_GH19 72 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0020 Psa-Chr5 1452633 1454263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0020 20 316 Glycoside Hydrolase AT3G12500 70.297 1.48e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0020 K20547 - pop:7470435 490.73