Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5244 ATGAAGTGTTGGAGATTGTCGGCGATTCTGTTTCTAGGGTTTATGTTGACTAGCTTGTCAACGGCGAGATTCGTGGTGGAGAAGAACAGTTTGTCGGTCACTTCGCCGGAGAAAATCAAAGGCAAGCACGACAGTGCCATCGGTAACTTCGGAATACCTCAATACGGTGGTAGCATGGCCGGAAACGTTGTTTACCCTAAAGATAATAGTAAGGGTTGTAAAGACTTCGATTCATCCTTCAAATCACGTCCTGGTGCTCTTCCCACTATCCTTTTGCTCGATCGTGGAAGTTGCTTCTTTGCTTTGAAGGTTTGGAATGCTCAGAAGGCTGGAGCTTCGGCGGTTCTTGTTGCGGATGATATAGAGGAACCGTTGATTACTATGGATACGCCGGAAGAGGATGTATCTTCTGCTAAGTACATTGAGAATATTACGATACCTTCTGCTCTTATTGGAAAGAGTTTTGGTGAGAAGTTGAAGGATGCTATCAGTGGTGGGGATATGGTTAATGTTAATCTTGACTGGAGAGAGGCTGTTCCTCACCCTGATGATCGTGTTGAGTATGAGTTGTGGACAAATAGTAATGATGAGTGTGGTGTTAAATGTGATATGTTGATTGAGTTTTTGAAGGATTTTAAGGGTGCGGCGCAGATTTTAGAGAAAGGAGGTTATACTCAGTTTACACCTCATTATATAACTTGGTATTGTCCTCATGCATTTACGTTGAGTAAGCAGTGTAAGTCTCAATGTATAAACCATGGAAGATATTGCGCTCCGGATCCTGAGCAGGACTTCAACACAGGTTATGATGGAAAAGATGTGGTTGTTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAAAGAAACAGAAAAGTCTTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGATGCCCGATGAAGGAGAAAAAGTACAATAAGGAATGTGCAAATTCCGTCATTAAATCTCTGGGTCTTGACGTTGAAAAGATTGACAAGTGCATGGGAGATCCGAATGCTGATACTGAAAATTCCATTTTAAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGAACACGTGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAACAGACAATATCGAGGTAAATTGGAGAAAGGGGCCGTTCTAAAGGCTATTTGTTCTGGGTTTGAGGAAACCACTGACCCAGCTGTTTGTTTGAGCAATGATGTGGAAACAAATGAGTGTTTGACAAACAACGGTGGTTGTTGGCAGGATAAAACGGCTAATATCACTGCATGCAAGGATACATTCCGTGGACGAGTATGTGAATGCCCCTTGGTTGATGGGGTGCAATTCAAAGGAGATGGTTATACAACTTGTGAAGTTAGTGGACATGGGCGTTGCAAGATTAACAATGGAGGCTGTTGGCATGATGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATGATGGAGGAGTTAAATGCCAGTGTCCTGCCGGGTTTAAAGGTGATGGTGTAAAAAATTGTGAAGACATTGATGAATGCAAAGATAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATAACTGCAGTTGTAGTGGAGATCTTCTGTATATCAAAGACCAGGATACATGCATCAGTAAAACTGCCAGTCAGGCAAAATCCACTTGGGCTGCTTTTTGGGTCGTTTTGATTGCCTTAGCTATGATTGCTGGAGGGGGATTCCTTGTGTATAAATATAGAATTAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGAAGAAGGTCCAAATCACGTCAATCATCAAAGAGGTTGA 1872 0.4241 MKCWRLSAILFLGFMLTSLSTARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCKDFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFNTGYDGKDVVVENLRQLCVFKVAKETEKSWVWWDYVTDFQIRCPMKEKKYNKECANSVIKSLGLDVEKIDKCMGDPNADTENSILKEEQDAQIGKGTRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKTANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEVSGHGRCKINNGGCWHDARNGHAFSACLDDGGVKCQCPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCSCSGDLLYIKDQDTCISKTASQAKSTWAAFWVVLIALAMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQEEGPNHVNHQRG* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5244 623 Gene3D Laminin 466 515 - -
Psa4g5244 623 SMART egfca_6 512 554 IPR001881 GO:0005509
Psa4g5244 623 Gene3D Laminin 405 461 - -
Psa4g5244 623 CDD PA_VSR 49 173 - -
Psa4g5244 623 Pfam Complement Clr-like EGF-like 495 515 IPR026823 -
Psa4g5244 623 Gene3D Glutaredoxin 234 395 - -
Psa4g5244 623 CDD EGF_CA 512 540 - -
Psa4g5244 623 Gene3D - 21 182 - -
Psa4g5244 623 ProSitePatterns Calcium-binding EGF-like domain signature. 512 538 IPR018097 GO:0005509
Psa4g5244 623 Gene3D Laminin 516 555 - -
Psa4g5244 623 SUPERFAMILY PA domain 85 169 IPR046450 -
Psa4g5244 623 ProSitePatterns EGF-like domain signature 2. 496 510 IPR000742 -
Psa4g5244 623 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 13 602 - -
Psa4g5244 623 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 602 - -
Psa4g5244 623 Pfam PA domain 60 159 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5244 Psa-Chr4 445619700 445624244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5244 22 623 Miscellaneous Gene Families AT2G14740 83.471 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5244 - - gmx:100820115 1177.93