Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5174 ATGATGAGTATCAGTATCATGGCTCTCCCACTCGTCATCTCCGTTTTCAAACCCCTCACCACCACCACCACCACCACCCGCCTCCACTCCACACTCTTACGCCGCCGTTTCACTACTTCTACTCTTACCGCCTCGGCCACAACCACTCCTCAACAACCTTCACCTTCACATTCAACTTCTCTCTCTCAACACTCTTCATCATCTTCCACTTCCACACTCCCCAATCACAACCTCTCTTCCCTCACTTTCCAGCAAGCTATTCAGCGTCTTCAGGAATATTGGGCTTCCGTTGGATGTTCCATAATGCAATGCAGCAACACAGAGGTAGGAGCTGGGACTATGAATCCTCTTACATATTTAAGAGTTCTCGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCGTCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAAACACACTCAATTTCAGGTAATATTGAAGCCTGATCCTGGAAATTCACAGGACCTTTTTATCCGCAGCCTTTCAGCTTTAGGTATTGATGTTACTGCCCATGATATACGATTTGTAGAGGACAACTGGGAGAGCCCGGTTCTTGGTGCCTGGGGTTTGGGATGGGAAATCTGGATGGATGGAATGGAGATTACTCAGTTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCAGTATCGGTAGAAATAACTTATGGCCTGGAACGTATCCTCATGTTACTACAGGGAGTTGATCACTTCAAAAAGATCAAATATTCTGATGGAATTACTTATGGAGAGCTATTCTTGGAGAATGAAAAGGAAATGAGTGCATATTATTTGGAGCATGCCAGTGTTGATCATCTTCAAAAACATTTTGATTTCTTTGAGGAGGAATCTCGTCGTTTACTTTCTTCAGGCCTTGCAATCCCTGCGTATGATCAGCTACTGAAAACGTCTCATGCTTTTAATATTTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGTTATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCCCAACTTTGGTTGAAGACCAGGGAGATGCTTGGCTACCCCCTTGGTTTCATCTCCGAACCTGATCATTCTGTAATGCCAAAGGATGTTTTGAAGGCCGCATGTGAAAAGGTGCATGATCATGCAAGATCATTTGTTCTTGAAATTGGAACCGAAGAAATGCCACCTCATGATGTTGTTGATGCAAGCAAGCAACTGAAAGATTTACTGGTGCAATTACTGGATCGACAGAGGTTAAAGCATGGTGAAGTGCAGGTTTTTGGCACTGCACGGAGACTAGTGGTTTCTATTGAAAATCTTTTCACGAAACAAAGAGAGCAGGAGATTGAGGTTCGAGGTCCTCCTGTTTCAAAAGCATTCGATCAGGAAGGAAATCCAACAAAGGCTGCTGAGGGTTTTTCCCGTAAATACACCGTTCCACTGGACTTGGTATACAGAAAGGTTGATGGGAAAACAGAATATGTATATGCTCGAATAAAAGAGTCTTCCAGACATGCCGTGGAGGTTTTATCTGAAGATTTGCCTGCTACTATTGCAAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCACAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCTTTGCATGGAGATGTTGTGGTCCCATTTATGTTTGCTGGGGTAGTGAGTGGGAACTTGTCGTGCGGTCTTCGTAATACTGCATCAGCCGTTGTCCAGATAGAAAATGCAGAATCATATTCAGTTGCAATGGAAAGTGCGGGAGTCAATGTTATAGTTGAGGACCGTAAGAAAAAAATTGTTGAGCAATCTAATACATTAGCTGAGAGTGTAAATGGTCAAATTCTGATTCCGAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAGGAAACCTTCTTAGATCTTCCAAAGGATCTTTTGACTATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGCAATACTAATGGACAACTACTGCCTTACTTTATTGCTGTTGCAAATGGAGCAATTGATGAGACTACAGTGAGAAAAGGAAATGAAGCAGTGCTCAGAGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGATGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAACTTGGAACCATGCTGGATAAAATGACTCGTGTTGAAAACATGGTTACTGAGCTAAGTTGCATCATGGATATCAATGAAGATCTGCAACAAATCATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTGCCACATCAGTTGTCACTGAGTTTACAGCACTTTCAGGAGTAATGGGGCGTCACTACGCCCTTCGAGATGGATACTCAGAGCAGACTGCAGAAGCCTTGTTTGAGATCACACTTCCTAGATTTTCTGGGGACATGCTTCCTAATAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTCACTGCTGGCTGTCAACCTAGTTCCACAAACGATCCATTTGGCCTGCGACGAATCTCATATGGTCTTGTGCAATTGTTAGTGGAAAAGAATAAAAACCTAGATTTTAAAGAGGCTCTGGAACTTGCCGCAGATGTCCAGCCAATTAAAGTAAATCCTCAAGTAATAGACGATGTACGTCAATTTGTCACTCGAAGATTAGAGCAATTTCTGGTGGACAAGGGAGTGAGTGCAGAAATTGTTCGTTCCGTCCTTGCAGAGAGGGCTAACTTTCCCTGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAAAGGAGAGCTTTTCCCTAAAGTAGTTGAAGCATACTCTCGACCAACTCGAATTGTCCGAGGAAAGGAAAATGAGCTTCATACGGAGGTGGATGAGACTGCCTTCGAGACAAATGAAGAAAGAGTTTTGTGGAACACATTTTCGTCCGTGAAAAAGAGTATCAATCCTGGTCTTGACATCGATGATTTTGTTGAAATTTCATCCCAGCTTGTACAACCACTTGATGATTTCTTTAATAATGTCTTCGTAATGGTGGATGATGCCAAGATCAGAAAAAACAGACTAGCTCTGCTAAAAGGAATTGCTGAACTCCCTGAAGGAATTGCAGACCTTACATTGTTACCAGGATTTTAA 3234 0.4276 MMSISIMALPLVISVFKPLTTTTTTTRLHSTLLRRRFTTSTLTASATTTPQQPSPSHSTSLSQHSSSSSTSTLPNHNLSSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSVRPDDSRYGENPNRLQKHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHLQKHFDFFEEESRRLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGYPLGFISEPDHSVMPKDVLKAACEKVHDHARSFVLEIGTEEMPPHDVVDASKQLKDLLVQLLDRQRLKHGEVQVFGTARRLVVSIENLFTKQREQEIEVRGPPVSKAFDQEGNPTKAAEGFSRKYTVPLDLVYRKVDGKTEYVYARIKESSRHAVEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVVSGNLSCGLRNTASAVVQIENAESYSVAMESAGVNVIVEDRKKKIVEQSNTLAESVNGQILIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCNTNGQLLPYFIAVANGAIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFSEFREQLKNILFHEKLGTMLDKMTRVENMVTELSCIMDINEDLQQIIREAASLAMSDLATSVVTEFTALSGVMGRHYALRDGYSEQTAEALFEITLPRFSGDMLPNSDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKEALELAADVQPIKVNPQVIDDVRQFVTRRLEQFLVDKGVSAEIVRSVLAERANFPCLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKENELHTEVDETAFETNEERVLWNTFSSVKKSINPGLDIDDFVEISSQLVQPLDDFFNNVFVMVDDAKIRKNRLALLKGIAELPEGIADLTLLPGF* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5174 1077 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 81 361 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 SUPERFAMILY HD-domain/PDEase-like 723 857 - -
Psa4g5174 1077 Hamap Glycine--tRNA ligase beta subunit [glyS]. 393 1074 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PRINTS Glycyl-tRNA synthetase alpha subunit signature 135 150 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PRINTS Glycyl-tRNA synthetase alpha subunit signature 156 176 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PRINTS Glycyl-tRNA synthetase alpha subunit signature 187 211 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PRINTS Glycyl-tRNA synthetase alpha subunit signature 213 233 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PRINTS Glycyl-tRNA synthetase alpha subunit signature 236 251 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PRINTS Glycyl-tRNA synthetase alpha subunit signature 321 337 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 SUPERFAMILY Class II aaRS and biotin synthetases 82 360 IPR045864 -
Psa4g5174 1077 MobiDBLite consensus disorder prediction 39 74 - -
Psa4g5174 1077 Pfam Glycyl-tRNA synthetase beta subunit 396 940 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 Gene3D Bira Bifunctional Protein; Domain 2 69 284 IPR045864 -
Psa4g5174 1077 Gene3D Class II aaRS and biotin synthetases; domain 2 285 364 - -
Psa4g5174 1077 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 82 356 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 CDD GlyRS_alpha_core 82 360 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 TIGRFAM glyQ: glycine--tRNA ligase, alpha subunit 82 366 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 747 1039 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 TIGRFAM glyS: glycine--tRNA ligase, beta subunit 394 1074 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 Pfam Glycyl-tRNA synthetase alpha subunit 83 360 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Psa4g5174 1077 PANTHER GLYCYL-TRNA SYNTHETASE 393 1077 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5174 Psa-Chr4 444035851 444053190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5174 K14164 - gmx:100787365 1785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5174 4 444035851 444053190 Psa4g5174 4 444035851 444053190 ECH