Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5108 ATGGCATCATCAGATGAAGAGGGTGAGATTGTTCCAGATTTTGTTGATAGTTATTGGTTTGAAAATGATAAGGCGGAATTTGTTTCACTTTTTAGTTTGACATTATTGTGGAGCGTGGACGAGGTCGAATGTGACTCAGAAACAAAAGTGTTTTTACGCGGCATCACAGATAACGGCATCCAGAAAATTCACAAACAGATTACAGGATGGAGATTTGAACTTTCATGCGAGAAGCCTGAGATTTCAGTTCTATTGAGGGAGAAATACTGGATAGCTCTTCTAAAACCGAAAAAATGCTTTGAAAGTACTATTAGGTCAGTCTTGGTCACAGTTTCTTGGTTGCATTTTGTGAAATGGAATCCCGAGGAATCAAGAATACTTATTTGGAACAAAGTGTTGACGGAATTTAGCTCATTTGATATTCAACCTTCTGAGAATGATGTTCTAAGTCATATGACATTGATTACAGAGGCTGCTAAAAGGGACACTGATTTAACAAAATCCAAGTATTTGCTTAATTTCATAGGAAAGACATGTTCAAATGATGACATCCATGAGGATGTTCACACGACAAAGAAATTAAAATTTATAGTTGATTCAGAAGAGGAGGAGGAGGAGGAAAAATCTGAAGGTGAAGGTGAACTCAATGTAGATGGAGAGCAAAATATCGGATACGATACTGTTTGTGCAATTTGTGATAATGGTGGTGAAATACTTCCTTGTGAAGGAAGGTGTCTGAGATCCTTCCATGCAACTGTAGAGAGTGGTAGAGATTCATTATGTGAATCTCTTGGCTACACTAGTACTCAAGTTAATGCCTTTCCAAACTTCTATTGTGACAATTGTAGATATAAGAAGCATCAATGCTTTGCATGTGGCAGACTGGGTTCATCTGATGAATCATCTAATCCAGAGGTATTTCCTTGTGTTACTGCAAATTGTGGTCACTATTACCATCCAGAATGTGTTGCAAGACTACTCAACCCTGGAATTGAATCCAAACAAGAGGAAATGAGACAGAAAATTGCCATCGAAAAAACATTTGTCTGTCCTCTTCATATCTGTTCTCTATGTAGAAAAGGTGAAAATAGGAACGTTAGTGATTTGCAATTTGCAACGTGTAGACGCTGCCCCAAGGCTTACCACAGGAAATGCTTACCCAAGGAAATTTCCTTCATATTTGATTATTATATGGGCTTTGAGCAAAGGGCTTGGGATAATCTCCTTGACAAACGAATTTTGATGTATTGCTTGGATCATGAGATAGTTCCGGAACTTGGAACTCCAGCTAGAAACCATCTGATATTTCCTGATAAGGATATCAAAAGGAAGAAAATCAGTTTCAAATTATTAAACAAAGAGAAGGTTGCTATAACAGCGAACAAAAGTTTTGAAGAACTTCTTCTCACTAAGACATTGGTGCCAAAACTAACTTTAATGGAAAGATCTGTCCTTCAAGGTGGAAATTCTTCCAACGTTATGGAGAAAATATGCTCTAAGCCAGATACACATTTGTCATTTGAGCAGCCCAAAAAATACTTAAAGGTTGAAACAATGTCTGCGTCAAATAGGTGCTTACCGAATTTTGATAGCAAAGTGGCTTTGAAAAATGATAAATTGACTTGTAGTCCAAGGCTGCTGCATGAAGCTACATCACAACAGCAAAGATCTGTTGGTAGAATTGAAGAAACAAGCTTGAAGAAGCCTTCGGTTAAAAAAGTCAAAACTTCACTTGAAGTTAGAAAAGCAGATATGGAAAAACGAATTTTGTCTTTAATGGAAGAAGCCACATCTACATTGAACATGGAAAAATTTAAAAAGGAACAAGTCTTCAATACAAGTTCAAGTTCCACAGAAACTGTATTTCATAAGAACCTTACTCAAGGAAAAGTTGAAGGTTCTATTAAGGCTATTCAAATAGCTTTACAGAAGTTAGATGAAGGATGTAGTATTGAGGAAGCAAAAGCTATTTGTGAGCCAGAAATTGTTCGTCAGCTTTTTATTTGGCAGAAGCAACTCAAGGTCTATCTTGCACCTTTTCTTCATGGAATGCGATATACTTCATTTGGTCGCCATTTCACTAAAATAGACAAGTTGAAGGAGATTGTTGATAGGCTTCATTGGTATGTGCAAAATGGTGACACGGTTTTGGACTTCTGTTGTGGTGCGAATGATTTCAGCTGTCTAATGAAATCAAAGCTTGATCAGACTGGGAAATCGTCATGTTCATTTAAGAACTATGATTTATTCCAAGCTAAGAATGATTTCAACTTCGAAAAAAGAGACTGGATGAGTGTGAAGCCTGAGGAATTACCGGACGGTTCTCAGCTTATCATAGGGCTGAATCCTCCTTTCGGGGTCAAGGGTTTTCTTGCTAACAAATTTATTAACAAGGCATTGACGTTTAAGCCAAAACTCCTTATACTTATTGTGCCAAAAGTAACAAAAAGACTTGACAGAAAGAAAGGTGGATATGATTTAATTTGGGAGGATGAGGAAATATGTTCAGGAAAGTCATTTTATCTACCGGGTTCTGTCGACACTCGAGACAAGCAATTGGAAGACTGGAACCTGAAGCCGCCACCTCTTTACCTTTGGAGTCGCCCTGACTGGAGTCGTAGACACATTGAAATTGCTCAAATTCATTGCCACATCAAACATGACGCATATAATAATAAAGTACAAGAAATGTCAAATTATCTTATGGAGGAGAATCTTGATTGTTATATGGAGTACCGTGGATTACATGCACCTGGTAATTTTTTAAGCATATTTGATGGTGTTCCAGATGATAATGGTATTCCACTAGAGGATAGTGCAAATTACTTTCCTTGA 2835 0.3739 MASSDEEGEIVPDFVDSYWFENDKAEFVSLFSLTLLWSVDEVECDSETKVFLRGITDNGIQKIHKQITGWRFELSCEKPEISVLLREKYWIALLKPKKCFESTIRSVLVTVSWLHFVKWNPEESRILIWNKVLTEFSSFDIQPSENDVLSHMTLITEAAKRDTDLTKSKYLLNFIGKTCSNDDIHEDVHTTKKLKFIVDSEEEEEEEKSEGEGELNVDGEQNIGYDTVCAICDNGGEILPCEGRCLRSFHATVESGRDSLCESLGYTSTQVNAFPNFYCDNCRYKKHQCFACGRLGSSDESSNPEVFPCVTANCGHYYHPECVARLLNPGIESKQEEMRQKIAIEKTFVCPLHICSLCRKGENRNVSDLQFATCRRCPKAYHRKCLPKEISFIFDYYMGFEQRAWDNLLDKRILMYCLDHEIVPELGTPARNHLIFPDKDIKRKKISFKLLNKEKVAITANKSFEELLLTKTLVPKLTLMERSVLQGGNSSNVMEKICSKPDTHLSFEQPKKYLKVETMSASNRCLPNFDSKVALKNDKLTCSPRLLHEATSQQQRSVGRIEETSLKKPSVKKVKTSLEVRKADMEKRILSLMEEATSTLNMEKFKKEQVFNTSSSSTETVFHKNLTQGKVEGSIKAIQIALQKLDEGCSIEEAKAICEPEIVRQLFIWQKQLKVYLAPFLHGMRYTSFGRHFTKIDKLKEIVDRLHWYVQNGDTVLDFCCGANDFSCLMKSKLDQTGKSSCSFKNYDLFQAKNDFNFEKRDWMSVKPEELPDGSQLIIGLNPPFGVKGFLANKFINKALTFKPKLLILIVPKVTKRLDRKKGGYDLIWEDEEICSGKSFYLPGSVDTRDKQLEDWNLKPPPLYLWSRPDWSRRHIEIAQIHCHIKHDAYNNKVQEMSNYLMEENLDCYMEYRGLHAPGNFLSIFDGVPDDNGIPLEDSANYFP* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5108 944 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 924 - -
Psa4g5108 944 PANTHER EDM2-LIKE PROTEIN1 1 924 - -
Psa4g5108 944 CDD PHD2_NSD 288 353 - -
Psa4g5108 944 CDD PHD3_NSD 355 398 - -
Psa4g5108 944 SMART PHD_3 288 354 IPR001965 -
Psa4g5108 944 SMART PHD_3 228 283 IPR001965 -
Psa4g5108 944 SMART PHD_3 355 421 IPR001965 -
Psa4g5108 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 391 IPR013083 -
Psa4g5108 944 Coils Coil 575 595 - -
Psa4g5108 944 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 686 794 IPR029063 -
Psa4g5108 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 284 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5108 Psa-Chr4 442081593 442087298 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5108 - - cam:101512524 1516.13