Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5071 ATGAAGATTTTTCCAACGCTTTTCCTTATCACTTTTCTCTCATTCTCCACTTCTTATGCTTCTGTCAATGATTTCTGTGTAGCAGATTTAAAGGCTCCAGATACCCCTTCCGGCTACCACTGCAAACCCCTTGCAAACATAACATCAGACGATTTCGTCTTTCATGGCTTCGTAGCCGGAGACACCAAAAACTCCTTCAATGCTGCACTTTCCTCGGCTTTTGTCACCGATTTTCCCGGTCTTAACGGACTCGGAATCTCTGCAGCACGACTAGATATAGCCGAAGGTGGATCGATTCCAATGCATACTCATCCCGGTGCTACTGAATTATTGATAATGGTTCAAGGAGAAATAACTGCTGGATTTTTTACAACAAGTGCTGTTTTTTCGAAGACGTTGAAACCGGGTGATCTTATGGTTTTTCCACAAGGGATGTTGCATTTTCAAGTTAATTCTGGTAAAGGACAGGCTACTGCTTTTCTTGCCTTTAGTAGTGCAAACCCTGGTGCTCAATTACTTGATCTTCTTCTGTTTTCCAATAATTTGTCTTCTGAAATAGTGGCACAAACTACTTTCCTTGATTTTGCACAAGTTAAGAAGCTTAAGGCTCGTTTTGGAGGAAGAGGCTAA 630 0.4175 MKIFPTLFLITFLSFSTSYASVNDFCVADLKAPDTPSGYHCKPLANITSDDFVFHGFVAGDTKNSFNAALSSAFVTDFPGLNGLGISAARLDIAEGGSIPMHTHPGATELLIMVQGEITAGFFTTSAVFSKTLKPGDLMVFPQGMLHFQVNSGKGQATAFLAFSSANPGAQLLDLLLFSNNLSSEIVAQTTFLDFAQVKKLKARFGGRG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5071 209 CDD cupin_OxOx 20 205 - -
Psa4g5071 209 Gene3D Jelly Rolls 19 208 IPR014710 -
Psa4g5071 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Psa4g5071 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Psa4g5071 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Psa4g5071 209 Pfam Cupin 62 198 IPR006045 -
Psa4g5071 209 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Psa4g5071 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 205 - -
Psa4g5071 209 SMART Cupin_1_3 55 199 IPR006045 -
Psa4g5071 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 205 - -
Psa4g5071 209 SUPERFAMILY RmlC-like cupins 24 206 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5071 Psa-Chr4 440201059 440202291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5071 1 207 Miscellaneous Gene Families AT5G20630 55.024 5.83e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5071 - - gmx:100527498 323.553