Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5070 ATGAATATTATTCACATTATTGTTTTCTTTTTTTCTCTTGTCTCATTTTATATCCACCATGCAACTTCTAGCAATGATTTTTGTGTAGCAAACCTATTACTCCCAAACACCCCATCAGGGTATCAATGCAAATCCGAAGAAAATGTAACAGTGAATGATTTTGTATTCTCTGGCTTTGTAGCTGGAAGCACAGACAATCCTTTTAAGGTTGGATTTACTTCTGCATCTGTCACAGAATTACCGGGTCTTAACGGACTCGGTGTTTCTGCGGTAAGAGCAGACATGGATATAAATGGAACAGTACCAATGCACTCTCATGATGCAACTGAATTAGTTATCAATGGTGAAGGAGAAGTGACGGTTGGATTTATTTCAACAAAAAAGGTTTATTTGAAGGTTCTTAAACCTGGTGATGTTATGGTTATTCCAAAGGGATTATTGCATTTTTTAGTTAACACTGGTGGTACAAAAGGCACTGGTTTTGCTGTTTTTAGTAGCTCAAATCCTAGTGTGCATATGTTTGATAATCTTTTGTTTGGCAATGATTTATCAAGTGCCATAATTGCACAAACTACTGGACTTGATGTCTCACAAATTAAGAAGCTTAAGGCTCTGTTTGGCGGTAGTGGTTAG 633 0.3681 MNIIHIIVFFFSLVSFYIHHATSSNDFCVANLLLPNTPSGYQCKSEENVTVNDFVFSGFVAGSTDNPFKVGFTSASVTELPGLNGLGVSAVRADMDINGTVPMHSHDATELVINGEGEVTVGFISTKKVYLKVLKPGDVMVIPKGLLHFLVNTGGTKGTGFAVFSSSNPSVHMFDNLLFGNDLSSAIIAQTTGLDVSQIKKLKALFGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5070 210 CDD cupin_OxOx 26 206 - -
Psa4g5070 210 SMART Cupin_1_3 57 200 IPR006045 -
Psa4g5070 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 9 206 - -
Psa4g5070 210 SUPERFAMILY RmlC-like cupins 25 203 IPR011051 -
Psa4g5070 210 Pfam Cupin 67 199 IPR006045 -
Psa4g5070 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 206 - -
Psa4g5070 210 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Psa4g5070 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Psa4g5070 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Psa4g5070 210 Gene3D Jelly Rolls 21 210 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5070 Psa-Chr4 440141687 440142319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5070 23 210 Miscellaneous Gene Families AT1G72610 43.979 4.70e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5070 - - cam:101508818 241.121