Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4965 ATGATGACAGTGTTGAGTAATGGGAGTCCATGGACAAAGCTTGTTACACCATCTTTTCCCTTTCAATTTCTTCATCAATCACATGCTTACACTTCACGAATCTTATCCTTTCCACGTAAATTCTCTGTCAATGCTCTTTCACAACAATCCCTACCTGTTCGTGTTCGTTTTGCTCCTTCTCCTACTGGTAACCTTCACGTTGGTGGTGCCAGAACTGCCCTCTTCAACTACTTGTTTGCCAGGTCTAAAGGTGGGAAATTTGTGTTGAGAATAGAGGATACTGATTTGGAGAGGTCTACAAGGGAATCTGAGGAGGCGGTGCTTCGAGATCTTTCTTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGTGGAGATTATGGTCCATATAGGCAATCTGAGAGGAATTCTTTGTACAAAGAATATGCTGAGAAACTTCTTCAATCCGGTCAAGTTTATCGTTGCTTTTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGCAATTGCCTCCGGTATACACAGGTAAATGGGCCTATGCAACAGATAAGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCATATACATTCCGATTTCGTGTCCCGAAAGGAAGTTTAAAAATTAGCGACTTAATACGAGGAGAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCAGTTTATAACTTTTGTGTGCAACTAGCAGAGGAGCATTTACCGAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGAATTTCCCATGCCTAACTTTGCACACGTTTCCTTGATTTTAGCTCCTGATAGAAGTAAATTATCAAAACGACATGGAGCAACGTCTGTCGGTCAGTACAGGGAAATGGGATACCTACCTGAGGCAATGACGAATTACCTAGCATTATTAGGTTGGGGTGATGGGACCGAAAATGAGTTCTTCTCCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGTGTGAATAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGATGGATGAATGGTCAACATTTAAGAGCACGGCCCTTTGTTGATGATTCAATTCAACTACTTAAGGATGGAATTGACTTGATAACGGATGCAGACACTGCACTTTCGAATTTGCTTTCTTATCCTCTACATTCTACTTTACAAAGCCATGAAGCCGAACCTGTCATACAAGATAATCTTCCCGAGTTTTGTGCCAGTTTCTTGGCTGCCTACGATAGTGGTGATCTGTTACGTGCGCTCGAAGAAGGCCAAGCTGGCTGGAAAAATTGGGTCAAAGGCTTCGGCAAATCACTTAAGCGCAAGGGAAAATCACTCTTCATGCCCCTTCGGCTTCTGCTGACTGGAAAACTTCACGGTCCAGATATCGGAGCTACTGTTGTATTGCTTTATAAAGCTGGAGCCCCTTCGGCTTCTGCTGACTGGAAAACTTCACGGTCCAGATATCGGAGCTACTGTTGTATTGCTTTATAA 1533 0.4234 MMTVLSNGSPWTKLVTPSFPFQFLHQSHAYTSRILSFPRKFSVNALSQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKEYAEKLLQSGQVYRCFCSNEELEKMKEDAKLKQLPPVYTGKWAYATDKEVEEELAKGTPYTFRFRVPKGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVQLAEEHLPNTLRQALIYKALEFPMPNFAHVSLILAPDRSKLSKRHGATSVGQYREMGYLPEAMTNYLALLGWGDGTENEFFSLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPFVDDSIQLLKDGIDLITDADTALSNLLSYPLHSTLQSHEAEPVIQDNLPEFCASFLAAYDSGDLLRALEEGQAGWKNWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDIGATVVLLYKAGAPSASADWKTSRSRYRSYCCIAL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4965 510 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 366 486 - -
Psa4g4965 510 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 44 366 - -
Psa4g4965 510 PRINTS Glutamyl-tRNA synthetase signature 56 68 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa4g4965 510 PRINTS Glutamyl-tRNA synthetase signature 70 81 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa4g4965 510 PRINTS Glutamyl-tRNA synthetase signature 85 98 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa4g4965 510 PRINTS Glutamyl-tRNA synthetase signature 241 251 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Psa4g4965 510 Gene3D HUPs 44 365 IPR014729 -
Psa4g4965 510 SUPERFAMILY Nucleotidylyl transferase 53 349 - -
Psa4g4965 510 Pfam tRNA synthetases class I (E and Q), catalytic domain 53 356 IPR020058 GO:0004812|GO:0005524|GO:0043039
Psa4g4965 510 Gene3D - 399 489 IPR020751 -
Psa4g4965 510 Pfam Anticodon binding domain 368 483 IPR045462 -
Psa4g4965 510 CDD GluRS_core 53 363 IPR033910 GO:0006424|GO:0008270
Psa4g4965 510 PANTHER GLUTAMATE--TRNA LIGASE 44 366 - -
Psa4g4965 510 PANTHER GLUTAMATE--TRNA LIGASE 366 486 - -
Psa4g4965 510 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 70 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Psa4g4965 510 Hamap Glutamate--tRNA ligase [gltX]. 52 506 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Psa4g4965 510 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 330 483 IPR008925 GO:0000049
Psa4g4965 510 TIGRFAM gltX_bact: glutamate--tRNA ligase 53 485 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4965 Psa-Chr4 430553609 430556958 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4965 K01885 - gmx:100810730 801.586