Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4810 ATGAAAGTTCTAATCTTTTGTATTTTGATTCTTGGTTTTGTTTCATCTTGTTTATGTGAGAGGTGGAATATCAATGCAGCTCCAACAAAGAATAATATATACAATGTGGTTGATTATGGTGCTCGGGGTGATGGAGTAACAGATGATACACAAGCATTTTTAAAAGCATGGAAAAATGCATGTGGAGCAAAAGGTGCATCAACCCTGCTTATACCACCCAAAAAATTATACTTGGTGAACAACTTGTTATTTAACGGTGAATGCAAGGCCAAGAGTATCCTCATTCAGCTTAAGGGAAAAATAGTTGCACCTCCTCAGAAAGCATTTAAGGACAAGTCATCTTGGATTAGGATCCAATATGTAAACAGTCTCACAATTGATGGCACAAGCACAGGAAGAATTGATGGCTTTGGTTCTACTTGGTGGCCATGCAAGAGTTGCCGTAGACCTATTGCATTGTCTTTCCATTCCTGCAATGATCTTACTGTTAGTAATGTGAGGATTACTAATAGCCCTGGAGGTCATATATCTATAAATGGTTGCAACAATGCAAAATTCTCTCATATGGACGTTCAATCTCCGGGTGATAGTCCTAACACTGATGGGTTTGACATTTCGTCTTCTAAAAATATTTTGATAGAAGATTCAAACATTCGAGTAGGTGATGATTGTATTGCCATCAATGGTGGCTCTTCATACATCAACGCTTCACGTCTTGCTTGTGGACCGGGTCACGGAATAAGCATTGGCAGTCTTGGTAGAGGTAACTCTTATGAGACAGTTGAAGAAGTACATGTACAAAATTGCAAGTTCACTAACACTACAAATGGAGCTAGAATCAAAACATTTCCGGGTGGATCAGGTTATGCGAGGAAGATTAGTTTTGAACAAATCCATCTTACAAATGTTAAGAATCCAATAATTATAGACCAACACTATGGGGTTAGAGATGTAAAGGAATCGGCTGTGAAAGTGAGTGATGTTAGATATTATGGGATTAAAGGAACTTCTGCTAGTGACGTGGCTATCAATTTGAAGTGTGAGAGCTGCTTCAATGTTGTATTGGATCAAATTAATATTGTTTCTTCTCAACCTAAAAAGAAGGCTCAGTCTTATTGCAAAAATTTCCATGGAAAAATTGGCTCCACTATTCCGAAAGTCAATTGCAATTGA 1173 0.3785 MKVLIFCILILGFVSSCLCERWNINAAPTKNNIYNVVDYGARGDGVTDDTQAFLKAWKNACGAKGASTLLIPPKKLYLVNNLLFNGECKAKSILIQLKGKIVAPPQKAFKDKSSWIRIQYVNSLTIDGTSTGRIDGFGSTWWPCKSCRRPIALSFHSCNDLTVSNVRITNSPGGHISINGCNNAKFSHMDVQSPGDSPNTDGFDISSSKNILIEDSNIRVGDDCIAINGGSSYINASRLACGPGHGISIGSLGRGNSYETVEEVHVQNCKFTNTTNGARIKTFPGGSGYARKISFEQIHLTNVKNPIIIDQHYGVRDVKESAVKVSDVRYYGIKGTSASDVAINLKCESCFNVVLDQINIVSSQPKKKAQSYCKNFHGKIGSTIPKVNCN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4810 390 Pfam Glycosyl hydrolases family 28 61 378 IPR000743 GO:0004650|GO:0005975
Psa4g4810 390 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 389 - -
Psa4g4810 390 SUPERFAMILY Pectin lyase-like 27 389 IPR011050 -
Psa4g4810 390 SMART pbh1 158 180 IPR006626 -
Psa4g4810 390 SMART pbh1 181 207 IPR006626 -
Psa4g4810 390 SMART pbh1 208 229 IPR006626 -
Psa4g4810 390 SMART pbh1 261 282 IPR006626 -
Psa4g4810 390 Gene3D - 22 388 IPR012334 -
Psa4g4810 390 PANTHER - 1 389 - -
Psa4g4810 390 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Psa4g4810 390 ProSitePatterns Polygalacturonase active site. 238 251 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4810 Psa-Chr4 419224418 419227423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4810 1 389 Glycoside Hydrolase AT5G17200 42.553 8.51e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4810 K01184 - gmx:100820332 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4810 4 419224418 419227423 Psa4g4810 4 419224418 419227423 ECH