Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4808 ATGCAAGGATTCATTGTTTATGTTTTAATTCTCTCTTTTATTTCACCTTGTCTGTGTATAAGGTTCCATGTTGGAACCACATATGGTACTACTTATAATGTGATGCAATATGGTGCAACTGGTGATGGCAAATCTGATGATACAAAAGCATTTTCAAGTGCATGGAGTAGTGCATGTAAAGCAGAAGGAATGTCAACATTAGTTATACCATCTGAAAAATCATTCTTGGTGAAGAAAATAGATTTTAGCGGTCCCTGCAATTCTGAAATTCTCATTAAGTTTGAAGGAAAAATAGTTGCACCTTCTAAAGATGAGTGGGAAGCTGGACCATATTGGATTGTCGTTGAAAATTTAAATGGACTCACAGTTGAAGGCAATAGTCAAGGAGTAATCGATGGAAGTGGTTCTACTTGGTGGGGTTGTTCAGATTGTGATCGACCAGGGGTGTTCCATTTTCATCAATGCGAAAATCTTACTGTTAGTGATTTGAGCATCAGTAATAGTCCACGATCTCATGTATCTATTAATGCGTGCAAGGGCACAACATTCTCTAATATAGCAATTAATGCACCTGCTTCAAGTCCTAACACTGATGGATTTGACATTTCTGATTCCACTAATGTTTTGATACAAGATTCCCACATAAAATCCGGTGATGATTGTATTGCTATCAATGGTGGCTCCTCTTTCATCAATGTTACAAGGCTTATTTGTGGACCCGGTCATGGAATAAGTGTTGGTAGCCTTGGTAAAAATGGAGCTAATGATAAAGTTTCTAATGTTTATGTACAAAATTGCACCTTTAGAGAAACTAGCAATGGAGCAAGAATCAAGACATTTTCAGGTGGATCAGGTTATGCAAAATATATTACGTATGAACAAATCACCCTTCAAAATGTTAAGAACCCAATAATCATAAATCAGGCATATCATGATTATCTGGAGGAAACATCATCTGTGTTGGTGAGTTCTGTGACATTTCGAGGATTTAAGGGGACTTATGTTGGTAAAGTGGCTATTAGTTTGGATTGTTCTTCATCCGGTTGTTTTGATATTCTTTTGGATCAAAACAGCATTGTACCTGCTGAGAATGAAAAAAGTGATTCTGTTAGTTGTAGAAATGCTCATGGAACTGTTAGAGATACTATTCCAAATGTCCCTTGTCTTTCTTGA 1173 0.3666 MQGFIVYVLILSFISPCLCIRFHVGTTYGTTYNVMQYGATGDGKSDDTKAFSSAWSSACKAEGMSTLVIPSEKSFLVKKIDFSGPCNSEILIKFEGKIVAPSKDEWEAGPYWIVVENLNGLTVEGNSQGVIDGSGSTWWGCSDCDRPGVFHFHQCENLTVSDLSISNSPRSHVSINACKGTTFSNIAINAPASSPNTDGFDISDSTNVLIQDSHIKSGDDCIAINGGSSFINVTRLICGPGHGISVGSLGKNGANDKVSNVYVQNCTFRETSNGARIKTFSGGSGYAKYITYEQITLQNVKNPIIINQAYHDYLEETSSVLVSSVTFRGFKGTYVGKVAISLDCSSSGCFDILLDQNSIVPAENEKSDSVSCRNAHGTVRDTIPNVPCLS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4808 390 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Psa4g4808 390 Gene3D - 23 386 IPR012334 -
Psa4g4808 390 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 388 - -
Psa4g4808 390 Pfam Glycosyl hydrolases family 28 59 376 IPR000743 GO:0004650|GO:0005975
Psa4g4808 390 SUPERFAMILY Pectin lyase-like 22 389 IPR011050 -
Psa4g4808 390 SMART pbh1 155 204 IPR006626 -
Psa4g4808 390 SMART pbh1 258 279 IPR006626 -
Psa4g4808 390 SMART pbh1 205 226 IPR006626 -
Psa4g4808 390 SMART pbh1 287 308 IPR006626 -
Psa4g4808 390 PANTHER - 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4808 Psa-Chr4 419169120 419171595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4808 1 381 Glycoside Hydrolase AT5G27530 46.036 1.05e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4808 K01184 - gmx:100801217 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4808 4 419169120 419171595 Psa4g4808 4 419169120 419171595 ECH