Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4797 ATGCAAGGATTCATCATTTATGTTTTGTTTTTTAGTTTTATTTCACCTTGTCTATGTACAAGGTTGAACGTTGGAACTACAAATGATATTTATAATGTAATGCAATATGGTGCAATTGGTGATGGCAAATCTGATGATACACAAGCATTTTCAAAAGCATGGAGTAGTGCATGTACATCAAGTGGGATGTCAACATTAGTTATACCTTCTGAAAAATCATTCATGGTCACTAGAGTAAATTTTAGTGGTCCTTGCAATGCGAAAATTCTCATTCAGATGGAAGGGCGAATAGTTGCACCTTCTAAAGAAGATTGGAAAGGTGCGGCGAATTTGATTTCGATGGAATATTTAAACGGACTTATCGTCGATGGCAATGGCCATGGAGAAGTCTATGGGAATGGTGCTACTTGGTGGAAATGTCGAACTTGTTTTCGACCTGGGGTGTTGTTTTTTCATGCATGCAATGGTCTTAATGTTCGTAACTTGAAGATCAGTGATAGTCCAAAAACTCATGTATATGTTAATCAATGCGATGGTGCAACATTCACTCGTGTATCTATTAATTCTCCTGCTACTAGTCCTAACACTGATGGGTTTGGCATTTCTTATTCTACTAATATCTTGATACAAGACTCCGATATAAAATCCGGTGATGATTGTATTGCCGTCAACGACGGTTCCACTTTTATCAATGCTACTCGAGTTACTTGTGGACCAGGTCATGGGATAAGCGTTGGTAGCCTCGGTAGAAATAGAACTACAGAAAAAGTTTCCGATGTTCATGTGCGGAATTGCACTTTCACTGGAACTGCAAATGGAGCAAGAATCAAGACAGTTGAAGGTGGATCAGGTTATGCAAAACAGATTAGTTTTGAACAAATCATCCTTGTGAATGTTAAGAACCCTATAATTATAGATCAAAAATATGATCCTGCTATTCGGGATACATCTGTGTTGGTGAGTTCTGTGACGTATCGAGGATTTACCGGAACTTCTGCAACCGATGTAGCCATTGATTTAGATTGTAGCTCATCTGGTTGTTACGGCATTGTATTGGATGAAAACAACATTGTCTCAGCTCAACCAGGAAAAAAGACTTCGGCTTTTTGTAGAAATGCTCATGGAGCTGCTACACATACTATTCCAAATGTTCTTTGTCTATCTAAATAA 1170 0.3821 MQGFIIYVLFFSFISPCLCTRLNVGTTNDIYNVMQYGAIGDGKSDDTQAFSKAWSSACTSSGMSTLVIPSEKSFMVTRVNFSGPCNAKILIQMEGRIVAPSKEDWKGAANLISMEYLNGLIVDGNGHGEVYGNGATWWKCRTCFRPGVLFFHACNGLNVRNLKISDSPKTHVYVNQCDGATFTRVSINSPATSPNTDGFGISYSTNILIQDSDIKSGDDCIAVNDGSTFINATRVTCGPGHGISVGSLGRNRTTEKVSDVHVRNCTFTGTANGARIKTVEGGSGYAKQISFEQIILVNVKNPIIIDQKYDPAIRDTSVLVSSVTYRGFTGTSATDVAIDLDCSSSGCYGIVLDENNIVSAQPGKKTSAFCRNAHGAATHTIPNVLCLSK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4797 389 PANTHER - 1 387 - -
Psa4g4797 389 Gene3D - 18 385 IPR012334 -
Psa4g4797 389 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Psa4g4797 389 SUPERFAMILY Pectin lyase-like 24 387 IPR011050 -
Psa4g4797 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Psa4g4797 389 SMART pbh1 257 278 IPR006626 -
Psa4g4797 389 SMART pbh1 204 225 IPR006626 -
Psa4g4797 389 SMART pbh1 177 203 IPR006626 -
Psa4g4797 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4797 Psa-Chr4 418899100 418900890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4797 30 378 Glycoside Hydrolase AT5G27530 44.722 1.30e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4797 K01184 - gmx:100820332 437.958