Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4783 ATGAAGGGTGAAGAAGGTGTGAAGACTACAACAACAACAACCTTGGATGTTCCGAACGTTGTTCCAGCTGTGGATTACGTTGTTGCTGATGCTGTTGAAGAAATTGAAGGAGGTGGAAATGATTCTTTTGCTGAAAAGGAAAATTCCGAGGTGGAAAAAGAGGTATCAGATTATGAAGATGAAAAAGAAGAAGAAGATGAAGATGATGAATCAGAAAATGGGGCTGATGATCCTGAACTTGAAACAGGTCTATCTCTTGATGATGGCTTCTTTGAAGTTGAAGCTATTCGTCGCAAGAGATACCGCAAGGGGAAGTTGGAGTACTTTGTGAAATGGATGGGATGGGAGGAGTCAGCAAATACTTGGGAGCCTCGAGATAATTTGGTTGCTCTTCCTGATATTGTTCAAGCTTTTGAGGAAGGCTTGAAATCGACACCGCATCAGAAGCGCAAGCGCAAGCAATCTAGTAATAGCGCTAAGCTCAACAAAAGGGTGGAGCGTTCCGCCACTCCTTACAGCCTTAGAAGCATAAAAACTAGCACCACCCATTCAAAGGCGTCTATCAGTAATTCAAAGCCCGCCACTCCTAGCTCAACAAAAGGCCTTAGAAGCATAAAAACTAGCACCAAGAATTCAAAGGCGGCTAACAGTAATTCAAAGCCCGCCACCCCTCTCAACGAACAACCTAGTATTCCCGACATTCCTGCATTTCCTCAGACCGTGCTGTTTGCTGACGAAGTGGAAAATTACGGTGATGGAAGCAGTCTTGAAAAAGTCAATCATGCTAATGATGATATGTCTGTGGATCCCCCAGAAGAGGTTCCTCAAAACAAGTCTGATCCTAAGCTTACTCCAAACACTGAAGAAAACGAGTCTGATGATCCTAAGCTTACTTCAAACATTGAAGAAAACAAGTCTGATGATCCTAAGCTTACTTCAAACATTGACGAAAACAAGTCTGGTGATCCTAAGCTTACTCCAAACGTCGAAGAAAACAAGTCTGATGATCCTAAGCTTACTCCAAACATCGAAGAAAACAAGTCTGGTCGCAGGCTTACTCGAAACAATAAGAAAAACAAGACTGGTCCTAAGCTGACTCGAAACAATAAGGAAATCAAGTCCGGTCCTAAGCTTACTCGAAACAATAAGGAATACAAGTCTGATAAGCTTACTCCAAGCATTGAAGAAAACAAGTCTGCTTCTAAGCTTACTCGAAACAATAAGGAAAACAAGTCGGATCCTAAGCTTACTCCAAACCTTGAAGAAAACAAGTCTGATCCTAAGCTTACTCCAAACCTTGAAGAAAACAAGTCTGATCCTAAGCTTACTCCAAACCTTGAAGAAAAAGAGTCTGATCCTAAGCTTACTCCAAACATCGAAGAAAACAAGCCCGATCCTAAGCTTACTCAAAACAATAACGAAAACAAGTCGGATCCTAAGCTTACTCCAAACATTGAAGAAAAAGAGTCTGATCCTAAGCTTACTCCAAACATTGAAGAAAACAAGTCTGATCCTAAGCTTACTCCAAATATTGAAGAAAACAAGTCTGATCCTAAGCTAACTCCAAACAAGGAGGAAAACGAGTCTGATCCTAAGCTTAGCGAACTTAAAGCCACAGCAACCAATGGAAACAGCGCTGGCAACCTCGCAATACAGTTTGAAGAAGCTGTGACTCCTCCAGTAAAACCTCACATGAATGAACAACCAAATGCGGTTTTCACAGAAGCGATTACCAAAAAAACTACAGGTAGCGCAGAACCTGTTCAAACTGGCTCTGCCCGGTCAGGAACCAGACGGAGAAAAACTACTGCTGTGAAGAGGTTCACCCGAGCTTCATTAGCTAGTAAGACCGGTAATGCAGGAGTTTCTGATATTGCGGCTCCTAGTAGTCATACAGTGACAGAACCTGTGAAACCGGGGTCCGATATTGTCGAGATTGTCAAGCCGGTAGGCTATTCAGCTGCAGAAGCCAGCACCAATCAGGAAGCTTCGGTGACCTTCAAGGTTAAAAGAGAAAAATAG 2022 0.4263 MKGEEGVKTTTTTTLDVPNVVPAVDYVVADAVEEIEGGGNDSFAEKENSEVEKEVSDYEDEKEEEDEDDESENGADDPELETGLSLDDGFFEVEAIRRKRYRKGKLEYFVKWMGWEESANTWEPRDNLVALPDIVQAFEEGLKSTPHQKRKRKQSSNSAKLNKRVERSATPYSLRSIKTSTTHSKASISNSKPATPSSTKGLRSIKTSTKNSKAANSNSKPATPLNEQPSIPDIPAFPQTVLFADEVENYGDGSSLEKVNHANDDMSVDPPEEVPQNKSDPKLTPNTEENESDDPKLTSNIEENKSDDPKLTSNIDENKSGDPKLTPNVEENKSDDPKLTPNIEENKSGRRLTRNNKKNKTGPKLTRNNKEIKSGPKLTRNNKEYKSDKLTPSIEENKSASKLTRNNKENKSDPKLTPNLEENKSDPKLTPNLEENKSDPKLTPNLEEKESDPKLTPNIEENKPDPKLTQNNNENKSDPKLTPNIEEKESDPKLTPNIEENKSDPKLTPNIEENKSDPKLTPNKEENESDPKLSELKATATNGNSAGNLAIQFEEAVTPPVKPHMNEQPNAVFTEAITKKTTGSAEPVQTGSARSGTRRRKTTAVKRFTRASLASKTGNAGVSDIAAPSSHTVTEPVKPGSDIVEIVKPVGYSAAEASTNQEASVTFKVKREK* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4783 673 ProSiteProfiles Chromo and chromo shadow domain profile. 91 150 IPR000953 -
Psa4g4783 673 MobiDBLite consensus disorder prediction 578 598 - -
Psa4g4783 673 SUPERFAMILY Chromo domain-like 84 147 IPR016197 -
Psa4g4783 673 MobiDBLite consensus disorder prediction 39 55 - -
Psa4g4783 673 SMART chromo_7 90 143 IPR000953 -
Psa4g4783 673 MobiDBLite consensus disorder prediction 1 18 - -
Psa4g4783 673 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 43 312 IPR044251 GO:0006325|GO:0031507
Psa4g4783 673 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 420 671 IPR044251 GO:0006325|GO:0031507
Psa4g4783 673 Pfam Chromo (CHRromatin Organisation MOdifier) domain 91 140 IPR023780 -
Psa4g4783 673 MobiDBLite consensus disorder prediction 172 226 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 284 352 - -
Psa4g4783 673 CDD CD_CSD 91 140 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 56 83 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 364 461 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 480 533 - -
Psa4g4783 673 Gene3D - 85 158 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 578 604 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 36 86 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 1 22 - -
Psa4g4783 673 Coils Coil 41 68 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 140 547 - -
Psa4g4783 673 MobiDBLite consensus disorder prediction 463 479 - -
Psa4g4783 673 ProSitePatterns Chromo domain signature. 108 128 IPR023779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4783 Psa-Chr4 418703598 418707696 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4783 - - aprc:113849713 189.889