Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4545 ATGATTATAAACTTGATTATATCATTTATTAAAGCCATTGTGTGGGATCCTGTTTTCCTACAACTTGTGGGAATGGCTTGTTTATACAGGATTGAATGCCTTCGTGGTAGGTTTTTTTTTTGCCCATATAATTTCTTTTCTGTGTTTCAGATTGTCAAAAATTGGGTAAAGCAGCTAACTCGTCTGAAGGGGTACACTGATCAAATGGTCCAAGATGCAAATGCTCTCATAGTCACTTTTGGTTCTTATCGGCTTGGAGTTCATGGTCCTGGTGCTGACCTAGATACACTTTGTATTGGGCCATCCTATGTTAATAGAGAGAGTGATTTTTTCTACACATTGCATGAGATTCTAGCTGGCCTGGATGAAGTTACTGAACTGCAACCAATTTCGGACGCTCATGTCCCAGTTATGAAGTTCAAGTTTGATGGAATATCGATCGACCTTCTTTATGCTAGTATTTCTCGTTTGATTGTACCTGAAGAATTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACGGTTCGAAGTTTGAATGGTTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGTACTTTCGAACAACACTCCGCTGCTTGAAGTATTGGGCCAAAAGACGAGGTCTTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTGAACTGGGCACTTCTTGTAGCTCGAGTGTGCCAGATGTATCCAAATGCAGTTCCGAGCATGCTTGTCTCCCGGTTCTTTAGGGTATATACACAGTGGAGGTGGCCTAATCCTGTCATGTTATGTCCAATAGAAGAGAATGAGCTTGGGTTTTCATTGTGGCATCCTCGCAAAAATCCTCGTGACCGAACCCATCTGATGCCAATCATCACTCCTGCCTATCCATGCATGAATTCAAGTTATAATGTTTCTACAAGCACCCTTCGAGTTATGATGGAGCAGTTCCAACATGGCAACAAAATTTGTGGGGATATAGATTTGAATAAAAGCTGCTGGAGGGCTCTGTTTGAACCATACCTTTTCTTTGAAGGCTACAAAAACTTCTTGCAAATTGACATAGTTGCTGCTGATGTTGATGACTTGCGGAATTGGAAGGGTTGGGTGGAGTCACGCCTTCGACAGCTGACTTTGATGATTGAACGTGATACTTTTGGGAAGTTGCAGTGTCATCCCTATCCTCGGGAGTATATTGATCCTTCAAGGAAATGTTTACATAATGCTTTCTTCATGGGCCTTCAGAGGAAAGAGGGGGAAGTTGCTCAAGAAGGCTGTCAGTTTGATATACGTGCGAGTGTTGAAGAATTTCGGCATTCTGTTAATAGCTACATGTTCTGGAAACCTGGAATGGATATTCATGTTTCGCACATCCGTAGAAGGCAAATCCCATGCTATGTGTTTCCAGATGGTTTAAAACGATCTCGACCATCAAGGTCAGCAGCACAACTGAAGAAGTCTCCTACATCAATTCATGGAAATGAGGTTTCTCCGACTGAACATGGTGAGAAGAACTTTAAGAGGAAGCATGATGACAGAGGGGTGAGGCAGAATGTTTCATTGAAAAAACATTGTGTTAGTCCTCCTGTGGATAGCTTGACAGGAGGCAGTCCATGCCTCCGTGCTGGTGACATGTCCGTTCATGCCATATCTGATTGTCAAGATTTGAAAAACGTTAGGAGTACGAGGTTGTCCAATTGTGCGCAAGATCAGTTTGATAGACGAATGTCTCCAGAATCCGGGACTGAATGTGCATCAAATTCAAGTGGGGTTACATCTGTTTCAAGTAATGGTGGTTCTTCTCCTGAAGATGTTGGGTCTGCACTGGTGGGAGGCTTTGTTGAGGCAACAACCAGTGGTAGATTTGAAGATACGACTTTCATGGAAGATTCTGTAAAACTTGGAAACAATACACTGTCTGGTAGAAATAATGACGTATTACAAAAAGAGCTACAGGCACAGTTGGAGGTTTTGGCTTTCATTCCTTTCCAAATTTTTAAGTTATTTATTTTATACCTCTTTTACTGTCCTGATATATCTCATGTCATCGTCTTAAAGGGGGCACTATGTGGCTAA 2091 0.4175 MIINLIISFIKAIVWDPVFLQLVGMACLYRIECLRGRFFFCPYNFFSVFQIVKNWVKQLTRLKGYTDQMVQDANALIVTFGSYRLGVHGPGADLDTLCIGPSYVNRESDFFYTLHEILAGLDEVTELQPISDAHVPVMKFKFDGISIDLLYASISRLIVPEELDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEYFRTTLRCLKYWAKRRGLYSNVTGFLGGVNWALLVARVCQMYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSLWHPRKNPRDRTHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQHGNKICGDIDLNKSCWRALFEPYLFFEGYKNFLQIDIVAADVDDLRNWKGWVESRLRQLTLMIERDTFGKLQCHPYPREYIDPSRKCLHNAFFMGLQRKEGEVAQEGCQFDIRASVEEFRHSVNSYMFWKPGMDIHVSHIRRRQIPCYVFPDGLKRSRPSRSAAQLKKSPTSIHGNEVSPTEHGEKNFKRKHDDRGVRQNVSLKKHCVSPPVDSLTGGSPCLRAGDMSVHAISDCQDLKNVRSTRLSNCAQDQFDRRMSPESGTECASNSSGVTSVSSNGGSSPEDVGSALVGGFVEATTSGRFEDTTFMEDSVKLGNNTLSGRNNDVLQKELQAQLEVLAFIPFQIFKLFILYLFYCPDISHVIVLKGALCG* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4545 696 PANTHER NUCLEAR POLY(A) POLYMERASE 4 49 572 - -
Psa4g4545 696 CDD NT_PAP_TUTase 59 195 - -
Psa4g4545 696 SUPERFAMILY Nucleotidyltransferase 48 194 IPR043519 -
Psa4g4545 696 Pfam Poly(A) polymerase predicted RNA binding domain 348 405 IPR007010 GO:0003723|GO:0043631
Psa4g4545 696 Pfam Poly(A) polymerase central domain 50 345 IPR007012 GO:0004652|GO:0043631
Psa4g4545 696 Gene3D Beta Polymerase, domain 2 50 189 IPR043519 -
Psa4g4545 696 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 348 474 IPR011068 GO:0003723|GO:0016779|GO:0031123
Psa4g4545 696 MobiDBLite consensus disorder prediction 578 605 - -
Psa4g4545 696 PANTHER POLY A POLYMERASE 49 572 - -
Psa4g4545 696 MobiDBLite consensus disorder prediction 502 519 - -
Psa4g4545 696 Gene3D Poly(A) polymerase predicted RNA binding domain 348 463 - -
Psa4g4545 696 MobiDBLite consensus disorder prediction 486 501 - -
Psa4g4545 696 SUPERFAMILY PAP/OAS1 substrate-binding domain 196 345 - -
Psa4g4545 696 Pfam Nucleotidyltransferase domain 69 145 IPR002934 GO:0016779
Psa4g4545 696 MobiDBLite consensus disorder prediction 482 519 - -
Psa4g4545 696 Gene3D - 190 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4545 Psa-Chr4 405111842 405117479 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4545 K14376 - gmx:100783237 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4545 4 405111842 405117479 Psa4g4545 4 405111842 405117479 ECH