Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4501 ATGTTCCAACATTTCACCACTTGTTTTCCCTTCTTTAACAACACCAAATCTCCCTCCAACAAGCCAAAAACTCAACCCAACAACAAACTATGTTCCACCTCCGACATATCAATCACTTCATTCCTTCACAACGAAGTCTCCGGCCAATTCCGACAAGTTTTCAAACTCATCGACACAAACAACGACGGAAAGATTTCACCAACAGAACTCAGTGAAGTGCTTTCATGTCTAGGATACAACAGCTACACAGCTGCTAAAGAAGCCGAGAGCATGATAAGAGTTTTGGATTTCAATGGAGATGGATTTGTAGACATTGATGAGTTCATGTTTGTAATGAAAGAAGAGAATTATGGAAAAGGAAAAGAGTGTGATCTTGATGAGTACTTAATGGATGCTTTTCTTGTGTTTGATAGTGATAAGAATGGATTCATCTCACCTAAGGAATTGAGGAGAGTTTTGGTTAATCTTGGATGTGAGAATTGTAGTTTAAGAGAGTGTAAACGTATGATTAAAGGGGTTGATAAAAATGGAGATGGGTTTGTTGATTTTGAAGAATTTAAATCTATGATGAAAATAGGACTTCAAATTTAG 591 0.3689 MFQHFTTCFPFFNNTKSPSNKPKTQPNNKLCSTSDISITSFLHNEVSGQFRQVFKLIDTNNDGKISPTELSEVLSCLGYNSYTAAKEAESMIRVLDFNGDGFVDIDEFMFVMKEENYGKGKECDLDEYLMDAFLVFDSDKNGFISPKELRRVLVNLGCENCSLRECKRMIKGVDKNGDGFVDFEEFKSMMKIGLQI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4501 196 Pfam EF-hand domain pair 127 191 IPR002048 GO:0005509
Psa4g4501 196 Pfam EF-hand domain pair 50 113 IPR002048 GO:0005509
Psa4g4501 196 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Psa4g4501 196 Gene3D - 4 121 - -
Psa4g4501 196 PANTHER CALCIUM BINDING PROTEIN 31 193 - -
Psa4g4501 196 CDD EFh 128 191 IPR002048 GO:0005509
Psa4g4501 196 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Psa4g4501 196 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Psa4g4501 196 CDD EFh 49 113 IPR002048 GO:0005509
Psa4g4501 196 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Psa4g4501 196 SMART efh_1 128 156 IPR002048 GO:0005509
Psa4g4501 196 SMART efh_1 87 115 IPR002048 GO:0005509
Psa4g4501 196 SMART efh_1 165 193 IPR002048 GO:0005509
Psa4g4501 196 SMART efh_1 49 77 IPR002048 GO:0005509
Psa4g4501 196 Gene3D - 122 194 - -
Psa4g4501 196 ProSiteProfiles EF-hand calcium-binding domain profile. 161 196 IPR002048 GO:0005509
Psa4g4501 196 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Psa4g4501 196 SUPERFAMILY EF-hand 38 191 IPR011992 -
Psa4g4501 196 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 31 193 - -
Psa4g4501 196 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Psa4g4501 196 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4501 Psa-Chr4 400763624 400765298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4501 129 194 EF-hand Containing Proteins AT1G24620 36.364 8.35e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4501 - - gmx:100799475 263.848