Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4440 ATGTCTTGTTCTTCCTTCAAATTCAACACTTTCCATTTTTGTATCATCATATTCATTTTACATGTCTTTGCTGCAACACCCGTTTTGTCTGATAATTCCTCATTCAACAACTTTCTAGAGATTGCCAAGACTCCTGAGGTTTTTGATTGGATGGTCAGTATCAGAAGGAAGATTCATGAGAATCCTGAATTGGGTTATGAAGAATTTGACACAAGTAAACTGATCAGATCAGAATTGGATAAAATGGGTATACCTTATAAACATCCAGTTGCAATCACTGGTGTCATTGGTTTCATAGGAACTGGATTGCCTCCTTTTGTTGCTTTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTAGAGTGGAAGCACAAGAGTAAATTATCTGGAAAAATGCATGCGTGTGGTCATGATGCTCATGTTACCATGCTACTTGGTGCTGCAAAGATTCTCAAACATCATGAAAAAGAAATACAAGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATTCTAGATGCCGGTGCCTTAGAAAATGTTACAGCTATCTTTGGATTGCATATTGCTCCTGAATTACCAATAGGTGAAGTGGCCTCTAGGTCTGGTCCAATATTGGCAGGAAGTGGCTTCTTTGAAGCAAAAATAAGTGGAAAGGGAGGTCATGCCGCAATTCCTCAACAGGCTATAGACCCTATATTGGCAGCTTCTAATGTGATTATTAGCTTACAACACCTTGTTTCTCGCGAGGCTGATCCTCTCGACTCCCAGGTTGTGACAATTGCAAAGTTTCAAGGAGGTAGTGCTTTCAATGTTATTCCAGATTATGTCACAATTGGTGGCACCTTCCGAGCCTTTTCTAAACAAAGCTTCAACCAACTGAGGCAGAGGATTGAGGAGGTTATCATTGGCCAGGCTACGGTGCATAGGTGCAATGCAACTGTGAACTTCCTTGATGGAGTGAAACCTTTCTATCCTCCAACTGTAAACAATGGTGATTTACACGAACATTTTGTGAATGTTGCAGTGAATCTGCTTGGCATCAATAAAGTTAATAGTGCCATGACCCCATTCATGGGATCTGAAGATTTTTCTTTCTATCAAGAGGCCATACCTGGTTACTTTTTCATGCTTGGAGTGAAGAGTGTTTCGCATAAACGGTTTGAGTCATCATTACACTCACCTTATCTCGAAATCAATGAAGATGGACTCCCATATGGAGCTGCACTTCATGCATCATTAGCTTCTAGTTATCTTCTAAAACATCAGCAAGATGTACCTGGTGTTGAGAGAAAATATCATGATGAACTATAA 1341 0.4042 MSCSSFKFNTFHFCIIIFILHVFAATPVLSDNSSFNNFLEIAKTPEVFDWMVSIRRKIHENPELGYEEFDTSKLIRSELDKMGIPYKHPVAITGVIGFIGTGLPPFVALRADMDALPMQEMVEWKHKSKLSGKMHACGHDAHVTMLLGAAKILKHHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHIAPELPIGEVASRSGPILAGSGFFEAKISGKGGHAAIPQQAIDPILAASNVIISLQHLVSREADPLDSQVVTIAKFQGGSAFNVIPDYVTIGGTFRAFSKQSFNQLRQRIEEVIIGQATVHRCNATVNFLDGVKPFYPPTVNNGDLHEHFVNVAVNLLGINKVNSAMTPFMGSEDFSFYQEAIPGYFFMLGVKSVSHKRFESSLHSPYLEINEDGLPYGAALHASLASSYLLKHQQDVPGVERKYHDEL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4440 446 TIGRFAM amidohydrolases: amidohydrolase 51 415 IPR017439 GO:0016787
Psa4g4440 446 Pfam Peptidase dimerisation domain 217 311 IPR011650 -
Psa4g4440 446 PANTHER PEPTIDASE M20 FAMILY MEMBER 14 446 IPR017439 GO:0016787
Psa4g4440 446 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 335 IPR036264 -
Psa4g4440 446 SUPERFAMILY Zn-dependent exopeptidases 45 430 - -
Psa4g4440 446 Gene3D - 216 334 - -
Psa4g4440 446 Pfam Peptidase family M20/M25/M40 108 424 IPR002933 GO:0016787
Psa4g4440 446 PANTHER AUXIN CONJUGATE HYDROLASE 14 446 - -
Psa4g4440 446 Gene3D Zn peptidases 51 412 - -
Psa4g4440 446 CDD M20_IAA_Hyd 51 428 IPR044757 GO:0009850|GO:0016787
Psa4g4440 446 PIRSF Amidohydrol_AmhX 37 432 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4440 Psa-Chr4 394588024 394590876 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4440 K21604 K14664 gmx:100789077 689.878