Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4393 ATGGCTATGCAACCGTTCGATCCGTATTACATGTACCAGCCAGATGAACGGAGCAACATCAACACGCTCTTCGTCTCCGGGCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGACGCCCTGGATTTGACTCTTGCCAACTCAAGTATACCGGCCGTGCTAACCAGGTTGTTGCATTTGCTACGTTTTTCAATAATCAAGCAGCTATGGCAGCGTTGCACGACCTAAATGGTGTGAAATTTGATCCTCAATCTGGGTCCGTCTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGAAAAATAGGTGGTGGAGCCTATGTGGTTATAGATAAAAGGTCAAAAGGGGAAGCCAATGTTCAGGGAGCCTCAAGTGATGATGGTGAAAGTGATGCTGATGAACCATCAGAAAATGGAAGCAACCATGGTGATATAGCAACTACCCAAAGTGGCGATGCTGTGGTTGGTTCTGACAATCGTGTACCTGGAGCAAGGGAGCAACATGGAAAGGGTGGTGGTGATGTAGGACCATGTTCCACTCTTTTTATTGCAAATCTTGGTCCAAACTGCACTGAGGATGAATTAAAGCAAGCTTTTTCTGTGCATGCTGGATTCAACTTGGTCAAAATGCGTTCAAGAGGAGGAATGCCTGTAGCATTTGCTGATTTTGAGGAAGTTGATCAAGCTGTTAAGGTCATGGAAGAGCTTCAGGGAACCACGCTTCCATCATCAGATCGGGGTGGCATGCATATAGAATATGCACGGTCTAGAATGAGGAAGAAGCGGTAG 807 0.4709 MAMQPFDPYYMYQPDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNNQAAMAALHDLNGVKFDPQSGSVLHIELARSNSRRKRKIGGGAYVVIDKRSKGEANVQGASSDDGESDADEPSENGSNHGDIATTQSGDAVVGSDNRVPGAREQHGKGGGDVGPCSTLFIANLGPNCTEDELKQAFSVHAGFNLVKMRSRGGMPVAFADFEEVDQAVKVMEELQGTTLPSSDRGGMHIEYARSRMRKKR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4393 268 Gene3D - 181 268 IPR012677 -
Psa4g4393 268 SUPERFAMILY RNA-binding domain, RBD 21 247 IPR035979 GO:0003676
Psa4g4393 268 CDD RRM_scw1_like 183 261 - -
Psa4g4393 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Psa4g4393 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 249 IPR000504 GO:0003723
Psa4g4393 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Psa4g4393 268 PANTHER RNA-BINDING PROTEIN-RELATED 13 256 - -
Psa4g4393 268 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 256 - -
Psa4g4393 268 SMART rrm1_1 186 258 IPR000504 GO:0003723
Psa4g4393 268 SMART rrm1_1 22 96 IPR000504 GO:0003723
Psa4g4393 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Psa4g4393 268 Gene3D - 16 103 IPR012677 -
Psa4g4393 268 CDD RRM_RBPMS_like 21 96 - -
Psa4g4393 268 MobiDBLite consensus disorder prediction 146 160 - -
Psa4g4393 268 MobiDBLite consensus disorder prediction 123 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4393 Psa-Chr4 389587012 389593155 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4393 - - cam:101503574 480.33