Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4353 ATGTATCGATTTGCTTCTAAATTGGCTTCCTCCATTGCTTCTTCCACCTCAAAGAACAAGAATCTCGTGTATAGTGGGGTATTGTTAAGAAGAAACTATGTGTCGAAAGATATAAACTTTGGAGTTGGGGCTCGTGCTGCTATACTTCAAGGTGTTTCTGAGGTTGCTGATGCCGTAAAAGTTACCATGGGACCTAAGGGTCGAAATGTGATAATTGAGAAAAGCCACAGGGGTCCCAGGGTCACGAAGGATGGTGTCACCGTAGCCAAAAGTATCAGTTTTAAAGACAAAGCCAAAAATGTTGGTGCCCAACTCATCAAGCAAGTGGCCAAGGCTACCAACACTGCTGCAGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCTATACTCATAGAAGGTTGCAAATCAATTGCTGCTGGTGTAAATGTCATGGACCTGCGTAATGGAATAAATAAAGCAGTTGATGCTGTAATTACTGATTTAAAAAGCAGAGCAGTAAGGATTAGTACACCAGAAGAGATAACCCAGGTTGGTACTATATCTGCAAACGGGGAGCGTGATATTGGAGAATTGATTGCAAGGGCAATGGAGAAAGTCGGGAAGGAAGGAGTCATTACTGTTGCTGATGGCAACACTTTGGAAAATGAGTTGGAAGTGGTGGAAGGAATGAAGTTAACTAGAGGCTACATATCTCCTTATTTTATTACTGACCAGAAGACCCAAAAATGTGAATTGGAGAATCCATTTATCCTCATCCATGACAAGAAAATTTCCGACATGAATTCACTGTTGAAAGTATTGGAGCTGTCAGTAACGAATAAAAGACCACTCCTAGTTGTTGCGGAAGATGTTGATAGTGATGCATTAGCTATGCTCATACTCAACAAGCATCGGGCTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTCGGGGATAATAGAAGAGCAGCTCTAGATGATCTTGCGATTCTTACCGGAGGAGAGGTTATCACAGAAGAGCGCGGCATAGCTCTCAATAAAGTCCGACCTGAAATGCTCGGCACTGCAAAAAAGATTACTGTCACCATTGATGATACTATTGTTCTACATGGTGGTGGAGATAAGAAGTTTATTGAAGATAGATGTGTGCAGCTAAGGGAAGCAATGGAGAGGAGTTCTGCAACATTTGATAAAGAAAAGGCACAAGAACGGCTATCAAAACTCTCCGGCGGTGTTGCTGTTTTCAAAGTTGGTGGGGCTAGTGAGGCAGAAGTTGCAGAACGGAAAGATAGGGTAACTGATGCTTTAAATGCCACTAGAGCAGCTGTGGAGGAGGGTATTGTTCCAGGTGGCGGAGTTGCTCTCTTGTATGCTAGCAAAGTCTTGGAGAATCTTGAAACTAAAAACGAGGATGAGAGAAGAGGAGTACAGATAATTCAGTATGCACTCAAGGCACCTACATTTACAATAGCTGCAAATGCTGGTTTTGATGGTTCTTTAATTTATAGCAAATTGTTGGAACAAGATAATCTTAATTTGGGTTTCGATGCTGCTAAAGGAACTTATGTTGATATGGTGAAGGCTGGAATTATAGATCCTGTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTATCGTTGTTACTGACGACAACCGAGGCATCTATTGTAGAAAATATGAGTGATAAAAACAAACCTCCTCATAGGGTGGCAGATATGGATGATTTGGACTACTAA 1731 0.4194 MYRFASKLASSIASSTSKNKNLVYSGVLLRRNYVSKDINFGVGARAAILQGVSEVADAVKVTMGPKGRNVIIEKSHRGPRVTKDGVTVAKSISFKDKAKNVGAQLIKQVAKATNTAAGDGTTCATVLTQAILIEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRAVRISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLENELEVVEGMKLTRGYISPYFITDQKTQKCELENPFILIHDKKISDMNSLLKVLELSVTNKRPLLVVAEDVDSDALAMLILNKHRAGLKVCAIKAPGFGDNRRAALDDLAILTGGEVITEERGIALNKVRPEMLGTAKKITVTIDDTIVLHGGGDKKFIEDRCVQLREAMERSSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVAERKDRVTDALNATRAAVEEGIVPGGGVALLYASKVLENLETKNEDERRGVQIIQYALKAPTFTIAANAGFDGSLIYSKLLEQDNLNLGFDAAKGTYVDMVKAGIIDPVKVVRTALVDAASVSLLLTTTEASIVENMSDKNKPPHRVADMDDLDY* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4353 576 ProSitePatterns Chaperonins cpn60 signature. 437 448 IPR018370 GO:0005524|GO:0006457
Psa4g4353 576 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 21 567 - -
Psa4g4353 576 PRINTS 60kDa chaperonin signature 59 85 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 PRINTS 60kDa chaperonin signature 115 142 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 PRINTS 60kDa chaperonin signature 300 323 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 PRINTS 60kDa chaperonin signature 382 407 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 PRINTS 60kDa chaperonin signature 430 451 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 SUPERFAMILY GroEL equatorial domain-like 39 553 IPR027413 -
Psa4g4353 576 MobiDBLite consensus disorder prediction 560 576 - -
Psa4g4353 576 MobiDBLite consensus disorder prediction 557 576 - -
Psa4g4353 576 Hamap Chaperonin GroEL [groEL]. 34 574 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 CDD GroEL 36 556 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 TIGRFAM GroEL: chaperonin GroL 35 557 IPR001844 GO:0042026|GO:0140662
Psa4g4353 576 Gene3D - 169 442 IPR027410 -
Psa4g4353 576 Pfam TCP-1/cpn60 chaperonin family 55 552 IPR002423 GO:0005524
Psa4g4353 576 SUPERFAMILY GroEL-intermediate domain like 170 236 IPR027410 -
Psa4g4353 576 Gene3D GroEL 224 405 IPR027409 -
Psa4g4353 576 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 21 567 - -
Psa4g4353 576 Gene3D - 38 555 IPR027413 -
Psa4g4353 576 SUPERFAMILY GroEL apical domain-like 216 408 IPR027409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4353 Psa-Chr4 383379469 383384947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4353 K04077 - gmx:100787285 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4353 4 383379469 383384947 Psa4g4353 4 383379469 383384947 ECH