Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4271 ATGTCCTTCCTATTTGGAGGTGATAAAATCAAAGGCACATTAGTGCTAATGCAAAAGAATGTCTTGGACATAAACAGCTTAACAGATCCTGCAAAGCTTATCGATGGAGCCTTGGATGGTTTTGGATCCATCCTTGATACTCTCACTTCCTTCTTGGGTGCATCCGTTTGTCTTCAGTTAATTAGTTCTACTAAACCTCTCTTAAGTGGAGAAGGAAAAGTGGGAAAAGAAGCTTATTTAAAAGAAGCCATTAACAATTTACCAACCTTGGGAGACAAGCAAACTGCATTCGGCATTGAGTTTGAATATGATAGCAACTTTGGAATTCCTGGAGCATTCAAAATCAAAAACTACATGTCAACTGAGTTCTTTCTTGTGAGCTTAACTCTTGATGATATTCCCAATCTTGGAACCATTCACTTTGTTTGCAACTCCTGGGTTTACAACGCCAAAAAATACCAAACCGATCGCATTTTCTTCGCCAACAATACTTTTGTAACAAGTGAAACACCGTCTCCATTAGTCTACTATAGACAATTGGAGTTGAAGACTTTACGAGGAAATGGAACGGGAGAGCGTCAAGAATGGGATAGAATTTATGATTATGATGTTTACAATGATTTGGGTGAGCCTGATAAGGGCCAAAGTTACGCTCGTCCAATTTTGGGACGATCTAGTGATCATCCTTATCCTCGTAGAGGAAGAACGGGGAGAAAACCTACCGCAACAGATCCTAACAGTGAGAGTAGAGGGAATAGTGTGTATATTCCAAGAGATGAAGCGTTTGGTCACTTGAAATCCTCGGACTTTCTTGTTTATGGACTTAAGTCTGTTTCGCAAGATGTAATTCCATTGCTACAATCTGCATTTGACATAAATTTCACACCAACTGAATTTGATAGCTTTGATGATGTGTTTGATCTATATGAAGGAGGAATTAAGCTGCCTACTGATATAATTAGCCAAATTAGTCCTTTACCAGTGTTATCAGAAATCTTTCGAACCGATGGTGAAGAATTCCTCAAGTTTCCACCACCTAAAGTAATTCAAGTGAGTAAGTCTGCGTGGATGACTGATGAAGAATTCGGAAGAGAGATTGTTGCTGGCGTAAATCCTGGCCTAATTCGTGCCCTCCAAGATTTTCCTCCAAAAAGTAAGCTTGACAGCGCAATCTATGGTGATCATACCAGCACAATAACCAAAGAGCAGATAGAGCCTAACTTGGAGGGTTTCATTACTCTTGATGAGGCCATACAAAACAAGAAACTGTTCTTGCTAGAACACCATGACACAATAATTCCATATCTAAGGCTAATAAACTCAACTTCAACCAAAGCTTATGCTTCAAGAACCATTCTTTTCTTGAAAAACGATGGAACTTTAAAGCCTCTAGCCATTGAGTTAAGCCTTCCACATCCTCAAGGAGATCAATTCGGCGTTGTTAGTAATGTCTACTTGCCTGCAATTGAAGGTGTTGAAGCTACAATTTGGCTACTTGCTAAGGCTTATGTTATAGTAAATGACTCATGCTTTCACCAACTTGTCAGCCACTGGTTGAATACTCATGCAGTTGTCGAACCTTTTGTGATAGCGACGAATAGGCAACTTAGTGTGCTTCATCCTATTTATAAGCTATTACATCCGCATTATCGCGATACGATGAATATAAATGCACTTGCTAGACAATCCTTAGTCAACGCAGATGGTATTATTGAAAAAACATTCTTGTGGGGAGGGTATGCTATGGAGATATCATCAAAAGTTTATAAGGATTGGGTTTTTACAGACCAAGCCCTACCCGCCGATCTCATCAAAAGAGGAATAGCGGTTGAGGATTCAACTTCGCCTCACGGTCTTCGTCTAGTGATAGAGGATTACCCGTATGCTGTTGATGGGCTCGATATTTGGGATGCTATTAAGACGTGGGTGCAAGACTATGTTTCGATATACTTCATATCAGATGAGAAAATTCAGCAAGACACTGAACTCCAAGCTTGGTGGAAAGAAGTTGTTGAAGTAGGCCATGGTGACAAGAAAGGCGAGGCGTGGTGGCCTAAATTGCAAACTCGCGGAGATTTGATTCATGTTTGTAATATTATCATATGGACTGCTTCAGCTCTTCACGCAGCTGTTAATTTTGGACAATATCCGTATGGAGGTTTCATATTAAACCGTCCAACTCTCAGTAGGCGATTAATGCCAGAGAAAGGTACTCCTGAGTACGATGAGCTAGCGACTAACCCTCAAAAAGCTTACTTGAAAACAATTACACCAAAGTTTCAAACTCTTATCGATCTATCAGTCATAGAGATCTTGTCGAGGCATGCTTCGGATGAGTACTACCTTGGACAAAGAGACAGTGCTGAGTATTGGACTTCTGATACAAATGCCTTAGCAGCTTTCAAGAAGTTTGGAAAAACACTAGCTGAAATTGAGGGACAACTCATTCTGAGGAACACTAATGAATCATTGAGAAACCGAGTTGGGCCGGTTAGCATGCCTTATACACTCTATCTCTATCCCTTCAAGTGA 2532 0.4036 MSFLFGGDKIKGTLVLMQKNVLDINSLTDPAKLIDGALDGFGSILDTLTSFLGASVCLQLISSTKPLLSGEGKVGKEAYLKEAINNLPTLGDKQTAFGIEFEYDSNFGIPGAFKIKNYMSTEFFLVSLTLDDIPNLGTIHFVCNSWVYNAKKYQTDRIFFANNTFVTSETPSPLVYYRQLELKTLRGNGTGERQEWDRIYDYDVYNDLGEPDKGQSYARPILGRSSDHPYPRRGRTGRKPTATDPNSESRGNSVYIPRDEAFGHLKSSDFLVYGLKSVSQDVIPLLQSAFDINFTPTEFDSFDDVFDLYEGGIKLPTDIISQISPLPVLSEIFRTDGEEFLKFPPPKVIQVSKSAWMTDEEFGREIVAGVNPGLIRALQDFPPKSKLDSAIYGDHTSTITKEQIEPNLEGFITLDEAIQNKKLFLLEHHDTIIPYLRLINSTSTKAYASRTILFLKNDGTLKPLAIELSLPHPQGDQFGVVSNVYLPAIEGVEATIWLLAKAYVIVNDSCFHQLVSHWLNTHAVVEPFVIATNRQLSVLHPIYKLLHPHYRDTMNINALARQSLVNADGIIEKTFLWGGYAMEISSKVYKDWVFTDQALPADLIKRGIAVEDSTSPHGLRLVIEDYPYAVDGLDIWDAIKTWVQDYVSIYFISDEKIQQDTELQAWWKEVVEVGHGDKKGEAWWPKLQTRGDLIHVCNIIIWTASALHAAVNFGQYPYGGFILNRPTLSRRLMPEKGTPEYDELATNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEYYLGQRDSAEYWTSDTNALAAFKKFGKTLAEIEGQLILRNTNESLRNRVGPVSMPYTLYLYPFK* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4271 843 Gene3D - 490 843 - -
Psa4g4271 843 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 2 839 - -
Psa4g4271 843 PRINTS Lipoxygenase signature 494 511 IPR013819 GO:0016702|GO:0046872
Psa4g4271 843 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Psa4g4271 843 PRINTS Lipoxygenase signature 532 552 IPR013819 GO:0016702|GO:0046872
Psa4g4271 843 Pfam Lipoxygenase 174 838 IPR013819 GO:0016702|GO:0046872
Psa4g4271 843 Gene3D - 166 265 - -
Psa4g4271 843 Gene3D - 266 354 IPR027433 -
Psa4g4271 843 CDD PLAT_LH2 9 162 IPR042057 -
Psa4g4271 843 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 165 IPR036392 GO:0005515
Psa4g4271 843 SMART LH2_4 8 162 IPR001024 GO:0005515
Psa4g4271 843 Gene3D PLAT/LH2 domain 3 165 - -
Psa4g4271 843 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 447 471 IPR001246 GO:0016491
Psa4g4271 843 PRINTS Plant lipoxygenase signature 769 783 IPR001246 GO:0016491
Psa4g4271 843 ProSitePatterns Lipoxygenases iron-binding region signature 2. 539 549 IPR020834 GO:0016702|GO:0046872
Psa4g4271 843 SUPERFAMILY Lipoxigenase 168 842 IPR036226 -
Psa4g4271 843 Pfam PLAT/LH2 domain 64 160 IPR001024 GO:0005515
Psa4g4271 843 ProSitePatterns Lipoxygenases iron-binding region signature 1. 512 526 IPR020833 GO:0016702|GO:0046872
Psa4g4271 843 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 843 IPR013819 GO:0016702|GO:0046872
Psa4g4271 843 PANTHER LIPOXYGENASE 2 839 IPR000907 GO:0016702|GO:0046872
Psa4g4271 843 Gene3D - 355 489 - -
Psa4g4271 843 ProSiteProfiles PLAT domain profile. 27 161 IPR001024 GO:0005515
Psa4g4271 843 MobiDBLite consensus disorder prediction 216 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4271 Psa-Chr4 376525992 376529184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4271 9 841 Acyl Lipid Metabolism Gene Families AT1G55020 58.107 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4271 K15718 - gmx:547869 1307.74