Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4265 ATGTTTGGCATCTTGAACACTAACAAGAGCCAGAAAATCAAGGGAACTGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCCATAACTTCCATCCCTAAGGGCAGTGTTCTCGACGCCCCCGGAAAAATCATCGGCGGTGTCACCGGCATTGTCGGCGGTGTTGTCGACACCGCCACTGCCTTCTTAGGCCGTAATGTCTCTATGCAGTTGATCAGTGCCACTAAAACTGATGCCGGTGGAAAAGGACAAGTTGGGAAGGAAACGTTTTTGAGCAGTCATCTTCCTCGGTTACCAACATTGGGAGCAAGACAAGATGCATTCAGTATTTATTTTGAGTATGATGCAAATTTTGGAATCCCTGGAGCTTTTTACATAAGAAACTACACTTCTGCTGAGTTCTTCCTTGTCAGTGTGACTCTTGAAGATATTCCTAACCGTGGATCTGTTCAGTTTGTTTGTAACTCATGGATTTACAATTTCAGAAGTTACCAAAAGGACAGGATCTTCTTCACCAATGATACATATCTTCCGAATCAAACACCAGCTGCATTAAAGGCATTTAGAGAAGAAGAGTTGCAGAATCTAAGAGGAGATGGAACAGGAGAACGTAAGGAATATGATAGGATATATGATTATGACGTTTATAATGATCTTGGAAATCCAGATTCCGGCGACAAACTTGCTCGTCCGGTCCTTGGAGGGTCTAGCACTTTTCCTTATCCTCGTAGGGTTAGGAGCGGTAGAAAACCAACTAGAAAAGATCCTAAGAGTGAGAAACCTGGTGCAATTTATGTTCCAAGAGATGAAAATTTTGGCCACTTGAAATCATCAGACTTCCTTATGTTTGGAATAAAATCGCTGTCGCATGATGTCTTGCCTTTGTTTCAATCTGTAATTTTTGACCTTAATTTTACACCAAATGAGTTTGATAGCTTTGATGAAGTGCGTGGACTTTATGAAGGTGGAATTAAGCTTCCTACTGACATAATTAGTAAAATTAGTCCTTTACCTGCCCTTAAGGAAATCTTTCGTACTGATGGTGAACAAGTACTCAAGTTTCCACCACCTCATGTAATCAAAGTTAGTAAGTCTGCATGGATGACTGATGAAGAATTCGGAAGAGAGATGGTTGCCGGTGTAAACCCTTGTGTGATTCGTCTTCTCCAAGAGTTCCCACCAAAAAGCTCACTAGATGCTACTATCTATGGTGATCAATCTAGTACAATAACAAAAGAACACTTAGAAACCAACCTTGGTGGACTCACAGTAGAAGAGGCACTCAATGGAAAGAGATTATTCCTCCTAGATTACCATGATGCATTCATGCCATATTTGGAGAGGATAAACATTAGTGCAAAGGCTTATGCTACTAGAACAATCTTGTTCTTGAAAGATGATGGGACTTTAAAGCCCTTAGCCATTGAGTTAAGTTTGCCACACTCAAATGGGATCCAATATGGTGCTGAAAGCAAAGTATTCTTGCCTGCAGAAGAAGGTGTTGAAAGCACAATTTGGTTATTAGCCAAAGCTCATGTTGTTGTAAATGACTCAAGCTATCATCAACTTATGAGTCATTGGTTGAATACTCACGCAGTTATGGAACCATTCATCATAGCAACAAATAGACATCTGAGTGTGCTTCACCCGATTAATAAACTTTTATACCCTCACTACCGCGATACAATAAACATCAATGGACTTGCTCGACAATCTCTAATCAATGCTGGTGGCATCATAGAGCAATCATTTTTGCCGGGACCAAATTCCATTGAAATTTCTTCAACTGTCTACAAGAATTGGGTTTTCACTGATCAAGCATTACCGGCTGATCTTATCAAGAGAGGATTAGCTGTCGAGGATCCTTCTTCTCCACACGGCCTTCGTCTCGTGATAGAGGACTACCCTTATGCTGTTGATGGATTAGAGATTTGGGATGCTATTAAAGCATGGGTCCAAGACTATGTCTCCTTATATTATCCAACTAATGACACTGTTCAAAAAGACATTGAATTACAAACTTGGTGGAAAGAAGCTGTCGAAAAGGGTCACGGTGACTTGAAAGACAAGCCATGGTGGCCTAAGATGCAAACTATTCAAGACTTGGTTCAATCTTGCTCCATTATCGTATGGACTGCTTCTGCGCTTCACGCAGCCGTTAACTTTGGACAGTATCCTTATGGAGGATACATCCTTAACCGTCCAACGCTTAGTAGAAGATTTATCCCAGAGAAAGGAACTCCAGAATACGACGAGATGGTGAAAAGTCCTCAAAAGGCATATTTGAGAACAATTACTCCAAAGTATCAGACCCTTGTTGATCTTTCTGTGATTGAGATATTGTCAAGACATGCTTCCGATGAGGTGTATCTCGGCGAGAGGGATAACAAGAATTGGACATCTGATTCAAGGGCAGTACAGGCCTTTGCAAAGTTTGGAACCAAACTAACTGAAATTGAAGGGAAAATCCATAGCAGGAACAATGAGCCTGGTTTGAGAAACCGCTATGGGCCAGTGCAATTGCCCTATACTTTGCTTCTTCGTTCAAGTGAAGAAGGTTTAACTTTCAGAGGAATTCCCAACAGTGTCTCTATTTAA 2601 0.4118 MFGILNTNKSQKIKGTVVLMPKNVLDFNAITSIPKGSVLDAPGKIIGGVTGIVGGVVDTATAFLGRNVSMQLISATKTDAGGKGQVGKETFLSSHLPRLPTLGARQDAFSIYFEYDANFGIPGAFYIRNYTSAEFFLVSVTLEDIPNRGSVQFVCNSWIYNFRSYQKDRIFFTNDTYLPNQTPAALKAFREEELQNLRGDGTGERKEYDRIYDYDVYNDLGNPDSGDKLARPVLGGSSTFPYPRRVRSGRKPTRKDPKSEKPGAIYVPRDENFGHLKSSDFLMFGIKSLSHDVLPLFQSVIFDLNFTPNEFDSFDEVRGLYEGGIKLPTDIISKISPLPALKEIFRTDGEQVLKFPPPHVIKVSKSAWMTDEEFGREMVAGVNPCVIRLLQEFPPKSSLDATIYGDQSSTITKEHLETNLGGLTVEEALNGKRLFLLDYHDAFMPYLERINISAKAYATRTILFLKDDGTLKPLAIELSLPHSNGIQYGAESKVFLPAEEGVESTIWLLAKAHVVVNDSSYHQLMSHWLNTHAVMEPFIIATNRHLSVLHPINKLLYPHYRDTININGLARQSLINAGGIIEQSFLPGPNSIEISSTVYKNWVFTDQALPADLIKRGLAVEDPSSPHGLRLVIEDYPYAVDGLEIWDAIKAWVQDYVSLYYPTNDTVQKDIELQTWWKEAVEKGHGDLKDKPWWPKMQTIQDLVQSCSIIVWTASALHAAVNFGQYPYGGYILNRPTLSRRFIPEKGTPEYDEMVKSPQKAYLRTITPKYQTLVDLSVIEILSRHASDEVYLGERDNKNWTSDSRAVQAFAKFGTKLTEIEGKIHSRNNEPGLRNRYGPVQLPYTLLLRSSEEGLTFRGIPNSVSI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4265 866 Gene3D - 366 499 - -
Psa4g4265 866 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Psa4g4265 866 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Psa4g4265 866 ProSiteProfiles PLAT domain profile. 45 173 IPR001024 GO:0005515
Psa4g4265 866 Gene3D - 277 365 IPR027433 -
Psa4g4265 866 CDD PLAT_LH2 12 174 IPR042057 -
Psa4g4265 866 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 866 - -
Psa4g4265 866 MobiDBLite consensus disorder prediction 241 264 - -
Psa4g4265 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 866 IPR013819 GO:0016702|GO:0046872
Psa4g4265 866 SMART LH2_4 11 174 IPR001024 GO:0005515
Psa4g4265 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 177 IPR036392 GO:0005515
Psa4g4265 866 Pfam Lipoxygenase 186 848 IPR013819 GO:0016702|GO:0046872
Psa4g4265 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Psa4g4265 866 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Psa4g4265 866 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Psa4g4265 866 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Psa4g4265 866 SUPERFAMILY Lipoxigenase 178 866 IPR036226 -
Psa4g4265 866 Gene3D - 178 276 - -
Psa4g4265 866 Pfam PLAT/LH2 domain 77 172 IPR001024 GO:0005515
Psa4g4265 866 Gene3D PLAT/LH2 domain 2 177 - -
Psa4g4265 866 PANTHER LIPOXYGENASE 1 866 IPR000907 GO:0016702|GO:0046872
Psa4g4265 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
Psa4g4265 866 Gene3D - 500 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4265 Psa-Chr4 376248791 376275399 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4265 1 866 Acyl Lipid Metabolism Gene Families AT1G55020 56.532 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4265 K15718 - gmx:547835 1400.19