Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4219 ATGCACGTCATTAGTATATTTTTTGTTTCTCTCATATTCACGTTGACATTGAAAGCTGAAGCAACAAACACAAATTCTTCATATCCATTAACATTCCAATCTTTTCATGTTCCTCAAATTCAACAACGTGATGTCTTCATCAGCTTTCGCGGTCCAGGTATTCGCCACGGTTTTCTTGCCCATTTGGTTGAAGCTTTGTCTCAAAAGAAAATAACTTTCTTCATAGACAATAAGCTTATAAAAGGAGATGAAATAGCAGAATCACTTGTTCAAGCAATAGAAACATCTTCGATTTCTTTGGTTATATTCTCTGAAAACTATGCTTCTTCATCATGGTGTTTGGATGAGCTAGTCAAAATTGTGGAGTGTAGAGAGAAAAAAGGACAGGTTTTATTTCCTGTTTTTTATAAAGTGGACCCCACAATTGTGAGGCATCAAAATGGAACTTATGGAATTCATTTTGATGAACATGAGATGAAATACAGTTCGAACAAGGTGCAACGGTGGAGATATGCTTTGAAGAAAGCAGCAGATGTCAATGGGTTTCATTCATCAAATTATTTGTAA 567 0.3527 MHVISIFFVSLIFTLTLKAEATNTNSSYPLTFQSFHVPQIQQRDVFISFRGPGIRHGFLAHLVEALSQKKITFFIDNKLIKGDEIAESLVQAIETSSISLVIFSENYASSSWCLDELVKIVECREKKGQVLFPVFYKVDPTIVRHQNGTYGIHFDEHEMKYSSNKVQRWRYALKKAADVNGFHSSNYL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4219 188 PANTHER TMV RESISTANCE PROTEIN N-LIKE 25 184 - -
Psa4g4219 188 PANTHER TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN 25 184 - -
Psa4g4219 188 SUPERFAMILY Toll/Interleukin receptor TIR domain 42 182 IPR035897 -
Psa4g4219 188 SMART till_3 42 179 IPR000157 GO:0007165
Psa4g4219 188 ProSiteProfiles TIR domain profile. 41 188 IPR000157 GO:0007165
Psa4g4219 188 Pfam TIR domain 44 175 IPR000157 GO:0007165
Psa4g4219 188 Gene3D - 40 187 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4219 Psa-Chr4 373799634 373800448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4219 42 183 Miscellaneous Gene Families AT5G45220 40.559 7.26e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4219 - - mtr:MTR_8g020250 239.965