Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4213 ATGGGTATCATTGAGAAGATCAAAGAAATTGAGTTCGAGATGGCTCGGACTCAGAAAAACAAAGCCACCGAGTATCATCTTGGGCAGCTCAAGGCTAAGATAGCGAAACTAAGGACACAATTGTTGGAACCTCCAAAGGGTTCTAGTGGCGGTGGAGACGGATTTGAAGTTACGAAGTTTGGCCATGGACGTGTTGCACTGATTGGGTTTCCAAGTGTGGGTAAGTCAACTCTTTTGACGCTATTAACGGGCACTCATTCTGAAGCTGCATCTTATGAGTTCACAACTTTGACCTGCATTCCTGGGATTATACACTACAATGATACTAAGATTCAGTTGCTTGATCTTCCTGGAATTATTGAGGGTGCTTCTGAAGGCAAGGGGCGTGGGAGACAGGTTATTGCTGTTGCTAAATCCTCAGACATAGTATTGATGGTTCTTGATGCCTCCAAAAGTGAGGGTCATAGGCAAATATTGACTAAGGAGCTGGAAGCTGTCGGTTTGCGGCTAAACAAGAGACCACCTCAGATATATTTTAAGAAGAAAAAGACGGGTGGCATTTCATTCAACAGCACAATGCCCTTAACTCATGTGGATGAAAAGCTTTGTTATCAGATTCTACACGAGTACAAAATTCACAATGCAGAGATCCTTTTCCGTGAGGATGCGACAGTGGATGATTTCATAGATGTCATTGAAGGAAACCGTAAATACATGAAGTGTGTATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTGGACAGATTATCCCGGCAACCAAATTCTGTTGTCATTAGCTGTAACTTGAAGCTGAATTTAGACAGACTACTTTCAAGGATGTGGGATGAAATGGGTTTGGTTAGAGTTTATACAAAACCGCAAGGCCAGCAGCCAGATTTCAGTGATCCAGTGGTTCTTTCAGCTGATAGAGGTGGCTGCAGTGTAGAAGACTTCTGCAACCACATACATAGAAGTTTGGTGAAGGATGTGAAGTATGTTCTGGTGTGGGGTATAAGTGCTAGGCACTATCCACAACATTGTGGCCTTAGTCACGTTCTTCGAGATGAAGATGTTGTTCAGATTGTTAAGAAAAAGGAGACAGATGAGGGAGGAAGGGGTCGTTTCAAGTCACATTCCGACGCCCCTGCTCGGATATCAGACAGACAAAAGAAGGCTCCACTTAAACAGTAA 1200 0.4308 MGIIEKIKEIEFEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTMPLTHVDEKLCYQILHEYKIHNAEILFREDATVDDFIDVIEGNRKYMKCVYVYNKIDVVGIDDVDRLSRQPNSVVISCNLKLNLDRLLSRMWDEMGLVRVYTKPQGQQPDFSDPVVLSADRGGCSVEDFCNHIHRSLVKDVKYVLVWGISARHYPQHCGLSHVLRDEDVVQIVKKKETDEGGRGRFKSHSDAPARISDRQKKAPLKQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4213 399 Pfam C-terminal region of MMR_HSR1 domain 184 289 IPR031662 -
Psa4g4213 399 PANTHER DEVELOPMENTALLY-REGULATED G-PROTEIN 1 1 399 - -
Psa4g4213 399 ProSiteProfiles TGS domain profile. 288 366 IPR004095 -
Psa4g4213 399 SUPERFAMILY TGS-like 284 366 IPR012676 -
Psa4g4213 399 Pfam TGS domain 290 366 IPR004095 -
Psa4g4213 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 302 IPR027417 -
Psa4g4213 399 MobiDBLite consensus disorder prediction 367 399 - -
Psa4g4213 399 PANTHER - 1 399 IPR045001 GO:0003924|GO:0005525
Psa4g4213 399 ProSitePatterns GTP1/OBG family signature. 115 128 IPR006074 GO:0005525
Psa4g4213 399 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 63 288 IPR031167 GO:0005525
Psa4g4213 399 PRINTS GTP1/OBG GTP-binding protein family signature 65 85 IPR006073 GO:0005525
Psa4g4213 399 PRINTS GTP1/OBG GTP-binding protein family signature 86 104 IPR006073 GO:0005525
Psa4g4213 399 PRINTS GTP1/OBG GTP-binding protein family signature 113 128 IPR006073 GO:0005525
Psa4g4213 399 PRINTS GTP1/OBG GTP-binding protein family signature 130 148 IPR006073 GO:0005525
Psa4g4213 399 Gene3D - 132 237 - -
Psa4g4213 399 Gene3D - 1 91 - -
Psa4g4213 399 CDD TGS_DRG1 287 367 - -
Psa4g4213 399 Pfam 50S ribosome-binding GTPase 64 180 IPR006073 GO:0005525
Psa4g4213 399 TIGRFAM small_GTP: small GTP-binding protein domain 64 213 IPR005225 GO:0005525
Psa4g4213 399 Gene3D - 280 373 IPR012675 -
Psa4g4213 399 CDD DRG 64 295 IPR045001 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4213 Psa-Chr4 373464884 373472188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4213 K06944 - gmx:100305672 762.681