Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4212 ATGTCCCGCCTTAATCAAATTCAACCTCAGCAGCAGCAGCAACAGCAAATTGCCAGGCAGCAAGCCGGACTTTATGGCGGGCAGATGAATTTCGGTGGATCAGCTGCCGTCTCTGCTCAGCAACAACAATTAAGCGGCGGTGTTGGTGTTGGCATTGGTATTGCCAGGCAGCAAGCCGGACTTTATGGCGGGCAGATGAATTTCGGTGGATCAGCTGCCGTCTCTGCTCAGCAACAACAATTAAGCGGCGGTGTTGGTGTTGGCATTGGTGGTAGTGCTTCCAATTTGTCGCGGTCGGCGTTGATGGGACAGAGTGGTCACTTCCCAATGTTGTCTGGTGCTGGAGCAGCACAGTTTAATCTATTAACCTCGCCGAGGCAGAAGAGTGGGTTGGTGCAATCCTCCCAATTTTCTTCAGCTAATTCCGGTGGACAATCACTGCAAGGAATGCAACAAGCCATCGGGATGATGGGGCAGTCTAATCTAGCCTCTCTGAGGGCTAATGGAGCTCTTTATGCCCAGCAGCAGCAGCAGCTTCGATTGACTCCTAGCCAAATCAGGCAGCAGCTCTCACTCTCACAGCAGGCTTCACTTAACAATCAACAGGTTCAAGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAATTCTCAGTTGTCTGGATTGTCTCAGAATGGACAGCCTGCCATGATGCATAACTCTTTAACACAGAATCAGTGGCTTAAGCAAATGCCAGCAATGTCTGGCCCTGCCTCCCCATTGCGTCTTCAACAACATCAGAGGCAGCAGCAGCTGGCTTCATCTGCTCAACTGCAACAAAACTCTATTACCCTAAGCCAACAGCAATTGTCCCAGTTGATGCAGCAGAAATCCATGGGCCAGCCTCAGCTTCATCAACAGCAACAGCAGCATCCATCCTCCCAGCAGCAGCAACAACTTCTACAGCAGCAACAACAACAACAATCTCAACTACAAGCATCTCCAGATGCTACTGCATCTGGTACAACTACACCTGGTGGAAGTTCAAGCCAAGGAACTGAAGCAGCAACAAACCAAGTACTTGGGAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACAGGGTAAGCTGGACCCTTCAGTTATAGATTATCTTTTAGAGCTTGCTGATGACTTCATTGATACTGCAACTGCAAATGGTTGCATTTTGGCAAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTGCATCTAGAGAAAAATTGGGATTTGACAATTCCAGGGTATTCAAGTGAGGAGAAGAAGGGCCAGAATAGACCTCTCTCGAGTGATCTTCACAAAAGGCGACTAGATGCCGTCCGCACATTGATGGAATCGTCTTCACGTCCCCAACCAACTATTAACAATTCGAAAGATATCAGTAGACAGGGACATCCTAACCCTGTAGTTTCCAATCATCTAATAAAACCCTTGAGTTCAGACCAGTTAGTTTCCCATTCAACTGGTTCTCAAATGCTACAGCAGATGACAAGATTTTAA 1533 0.4723 MSRLNQIQPQQQQQQQIARQQAGLYGGQMNFGGSAAVSAQQQQLSGGVGVGIGIARQQAGLYGGQMNFGGSAAVSAQQQQLSGGVGVGIGGSASNLSRSALMGQSGHFPMLSGAGAAQFNLLTSPRQKSGLVQSSQFSSANSGGQSLQGMQQAIGMMGQSNLASLRANGALYAQQQQQLRLTPSQIRQQLSLSQQASLNNQQVQGLPRSSSLAFMNSQLSGLSQNGQPAMMHNSLTQNQWLKQMPAMSGPASPLRLQQHQRQQQLASSAQLQQNSITLSQQQLSQLMQQKSMGQPQLHQQQQQHPSSQQQQQLLQQQQQQQSQLQASPDATASGTTTPGGSSSQGTEAATNQVLGKRKIQDLVAQVDPQGKLDPSVIDYLLELADDFIDTATANGCILAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKGQNRPLSSDLHKRRLDAVRTLMESSSRPQPTINNSKDISRQGHPNPVVSNHLIKPLSSDQLVSHSTGSQMLQQMTRF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4212 510 MobiDBLite consensus disorder prediction 491 510 - -
Psa4g4212 510 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 1 43 IPR037794 GO:0000124|GO:0005669|GO:0046695
Psa4g4212 510 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 54 509 IPR037794 GO:0000124|GO:0005669|GO:0046695
Psa4g4212 510 Pfam Transcription initiation factor TFIID subunit A 355 422 IPR003228 GO:0005669|GO:0006352
Psa4g4212 510 MobiDBLite consensus disorder prediction 453 473 - -
Psa4g4212 510 Coils Coil 307 327 - -
Psa4g4212 510 CDD TAF12 354 422 IPR003228 GO:0005669|GO:0006352
Psa4g4212 510 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 1 43 - -
Psa4g4212 510 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 54 509 - -
Psa4g4212 510 MobiDBLite consensus disorder prediction 284 348 - -
Psa4g4212 510 SUPERFAMILY Histone-fold 352 423 IPR009072 GO:0046982
Psa4g4212 510 MobiDBLite consensus disorder prediction 455 473 - -
Psa4g4212 510 MobiDBLite consensus disorder prediction 253 268 - -
Psa4g4212 510 Gene3D Histone, subunit A 349 424 IPR009072 GO:0046982
Psa4g4212 510 MobiDBLite consensus disorder prediction 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4212 Psa-Chr4 373196172 373201468 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4212 K03126 - gmx:100783017 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4212 4 373196172 373201468 Psa4g4212 4 373196172 373201468 ECH