Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4204 ATGTTTCAAATCATTTTCCTCCTCTCCCTTTTCCTCTCCATTTCCAATGCTTCTGTCCAAGACTTCTGTGTAGCAGATCTCAAAGCCTCAGACACCCCTTCAGGCTTCCCTTGCAAGTCAGCCACAACAGTAACCGTAGAAGACTTTGCATTTTCCGGCTTAATTGAGCCAGCAAACGTAACAAACATAATCAACGCCGCCGTTACGCCTGCATTTGTCGCACAATTTCCAGGCCTTAATGGCCTTGGTCTCTCAGCAGCTAGGTTAGACCTTGGTCCTGCAGGTGTTATCCCTCTACACAGTCACCCGGGTGCAAGTGAGCTTCTTATTGTGACACAAGGTCACATCACTGCTGGATTTGTTTCTTCAGCTAACACTGTTTATATTAAAACTTTGAAGAAAGGTGAACTCATGGTTTTTCCACAAGGTTTGTTGCATTTTCAAGCTACTGCTGGTAAGAGAAAAGCTGTTGCTTTTCCTGTTTTTAGTAGTGCTAGTCCTGGTCTTCAGATTCTTGATTTTGCACTCTTTGCAAGCAATTTCTCTACTCCTTTGATTGCAAAGACCACTTTCCTTGATCCTGTTCTTATCAAGAAACTCAAGAGTGTTCTTGGTGGAAGCGGCTAA 627 0.437 MFQIIFLLSLFLSISNASVQDFCVADLKASDTPSGFPCKSATTVTVEDFAFSGLIEPANVTNIINAAVTPAFVAQFPGLNGLGLSAARLDLGPAGVIPLHSHPGASELLIVTQGHITAGFVSSANTVYIKTLKKGELMVFPQGLLHFQATAGKRKAVAFPVFSSASPGLQILDFALFASNFSTPLIAKTTFLDPVLIKKLKSVLGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4204 208 Pfam Cupin 53 194 IPR006045 -
Psa4g4204 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 204 - -
Psa4g4204 208 CDD cupin_OxOx 15 204 - -
Psa4g4204 208 SMART Cupin_1_3 52 198 IPR006045 -
Psa4g4204 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 204 - -
Psa4g4204 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Psa4g4204 208 SUPERFAMILY RmlC-like cupins 17 201 IPR011051 -
Psa4g4204 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Psa4g4204 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Psa4g4204 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Psa4g4204 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4204 Psa-Chr4 372374758 372376196 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4204 1 208 Miscellaneous Gene Families AT1G72610 67.788 2.38e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4204 - - gmx:100816355 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4204 4 372374758 372376196 Psa4g4204 4 372374758 372376196 ECH