Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4201 ATGATTTTCGTTCTTTTTCTCTTAACTCTTCTCTCACATTCCACATCAAATGCTTCAGTACTAGACTTCTGTGTAGCAGATTTATCTTCTCCACAAACCCCTTCAGGCTACCCTTGCAAATCATCAGTAACAATCAAAGACTTCGTTTTCTCAAACTTCAATGAAGGAAACACTTCCAACTTTTTCAAATTCTCAGTAACACCAGCATTTGTTAATCAGTTTCCAGCTGTTAATGGTCTTGGTATATCCGCAGCAAGGTTAGACCTAGACATTGGTGGCGTTCTACCAATGCATTCGCATCGCGGCGCTTCGGAGTTAATGATTATGGTTCAAGGTCGTATAACTGCTGGTTTTATTTCTTCTGATAATAAAGTTTTTGTTAAAACACTTTCCAAAGGTGAAGTTTTGGTTATTCCACAAGGTCTGTTGCATTTTCAGTTCAATGCTGGAAGGAATAAAGCTACTGCTTTTCTTACACTTAGTAGCTCAAACCCTGGTTCACAAGTTGTTGATCTTGCTTTGTTTGGTAATAATTTGAATTCTGCTTTTGTGGAGAAAAGTACTTTGCTTGATCATGCTCAAGTTAAGAAGCTTAAAGCTATTTTTGGTGGGAGTGGCTAG 621 0.38 MIFVLFLLTLLSHSTSNASVLDFCVADLSSPQTPSGYPCKSSVTIKDFVFSNFNEGNTSNFFKFSVTPAFVNQFPAVNGLGISAARLDLDIGGVLPMHSHRGASELMIMVQGRITAGFISSDNKVFVKTLSKGEVLVIPQGLLHFQFNAGRNKATAFLTLSSSNPGSQVVDLALFGNNLNSAFVEKSTLLDHAQVKKLKAIFGGSG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4201 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 202 - -
Psa4g4201 206 PRINTS Germin signature 98 118 IPR001929 GO:0030145
Psa4g4201 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Psa4g4201 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Psa4g4201 206 SMART Cupin_1_3 51 196 IPR006045 -
Psa4g4201 206 Pfam Cupin 53 195 IPR006045 -
Psa4g4201 206 CDD cupin_OxOx 16 202 - -
Psa4g4201 206 Gene3D Jelly Rolls 17 206 IPR014710 -
Psa4g4201 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 202 - -
Psa4g4201 206 SUPERFAMILY RmlC-like cupins 20 199 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4201 Psa-Chr4 372281591 372282527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4201 1 205 Miscellaneous Gene Families AT5G20630 53.365 2.93e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4201 - - lja:Lj3g3v2590370.1 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4201 4 372281591 372282527 Psa4g4201 4 372281591 372282527 ECH