Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3910 ATGGCCCTTACAAACGAATTCCTAGGTTCTTCATTGGTAGAGAGATCACTTTTTCCTTCTTCTTCACCATGTTTTCAACAGAAAAATGGTAGATTCTTGATCAAACCTGTTTTGGTTCCTTTCGGAAACAGAAGAGTTTTGAAACTCAGAAAATCTGCCAAGTTTCCTGTTGCAGCTCTAAGTGAAGATTTGGTGAAAAACTCTTCTTCTTCTTTATCTTCACCTTCATCTTCTCTTCCTTCCGAAAAACCGGTGAAATTCAAGGTTAGAGCTGTTGTCACAGTTCGGAACAAGATCAAAGAAGATTTCAAAGATACTATCGCGAAACATCTGGATGCTTTAACCGATAGAATTGGAAGAAACGTTGTTCTTGAACTTTTTAGTACTGAGATTGATCCAAAAACTAATGCTGCAAAGAAGACCAATGAAGCAGTACTTAAGGATTGGGCAAAGAAGACAAATATTAAAGCTGAGAGAGTTAATTACATAGCTGAATTCACAGTTGATTCAAATTTTGGAGAACCTGGTGCTATTACTGTGATAAATAATCATCAACAAGAATTTTTTCTGGAGAATATAACCATTGAAGGGTTTGCTACTGGAGCAGTTCATTTTCCTTGCAATTCTTGGGTTCAAGCTAGAAAAGATCTTCCTGGAAAGAGAATTTTCTTTTCTAATAAGGCTTATTTACCCGATGATACACCTGCTGGGCTTACAGTTTTGAGGAAGAAAGACTTAAAAAATCTGAGAGGTGATGGAAAAGGAGTTAGAAAATTATCTGATAGAATATATGATTATGACACATACAATGATTTGGGAAACCCAGACAAAGGAATTGATCTTTGTAGACCAAATCTCGGAGGATCGGAAATGTATCCATACCCTAGACGGTGTCGTACCGGTCGCGAACCAACCGATACAGATATTCGTGCTGAGAGTCGTGTGGAGAAGCCACTTCCTATGTATGTGCCAAGAGATGAAAGATTTGAGGAGTTAAAGCAGAATACATTTTCTGTGAAGAGGCTAAAAGGAGTTCTTCATAATTTATTGCCTGGCCTTAAATCAAGCCTTTCTGCTGATAATCAAGATTTCAATGACTTCTCAGATGTTGATGGACTTTATAGTGTAGGGCTACTCATTAAGTTGGGTTTGCAAGATGATGTTTTGAAGAAATTTCCATTGCCTAAAATTGTTGGCAAGATTAAAGAATCCACTAGCCAGGGTGTTCTTAAGTATGACATTCCCAAGATTATATCAAAGGATAAGTTTGCTTGGTTGAGAGATGATGAATTTGGGCGTCAAGCAATAGCAGGGGTTAACCCTGTTACCATTGAAAAACTTCAAGTTTTTCCACCTGTTAGTAAATTGGACCCTGAAATTTATGGTCCATTAGAGTCTGCTCTTAGAGAAGAACACATTTTACATCAACTTAATGGCATGACCGTCCAACAGGCAATTGATGAAAATAAGTTGTTCATAATTGATTATCATGATATCTACCTTCCATTTTTGGAAAGGATCAATGCTTTGGACGGTAGAAAATCATATGCCACAAGAACCATCTATTACTTGACACCTCTTGGTACTCTAAAGCCTATTGCTATTGAACTTAGCTTGCCTCCATCTGGACCAAACACACGTTCAAAACGTGTAGTTACACCTGCTCTAGATGCAACTACTAATTGGATGTGGATGCTTGCCAAGGCCCATGTTTGCTCCAATGATGCCGGTGTGCACCAACTCGCAAACCATTGGTTGCGCACGCATGCTTGCACGGAACCATTTATATTGTCGGCTCATAGGCAATTAAGCGCAATGCACCCGATTTTCAAGCTATTGGATCCACACATGCGGTACACTTTGGAGATCAATGCTTTAGCTCGTCAGAGTTTGATCAGTTCGGAAGGTGTCATTGAGTCTTGCTTCACTCCCGGTCGCTACGCCATGGAGATTAGTTCGGCTGCTTACAAAACCTTTTGGCGCTTCGATAAAGATAGCCTCCCTCAAGATCTCCTCCGCAGGGGAATGGCAGTACCTGACCCAACAAAACCACATGGAATAAGGTTAATAATGAATGATTACCCTTATGCAGAAGATGGTCTTTTAATTTGGTCAGCAATAGAAAATTGGGTTAGAACATATGTGAACTATTACTACCCGAATCCGAGCCTAATAATCAATGACAGAGAGTTACAAGCTTGGTATTCCGAAGCAATCAATGTAGGCCATGCTGATGTAAAGGACGAAACATGGTGGCCGAAACTGAACGACAGCGACAATCTTGTCTCCGTCCTAACAATCTTAATCTGGAACGCGTCCGCGCAACACGCCGCATTGAACTTCGGACAGTACCCTTATGGAGGATACGTGCCAAATCGTCCTCCCTTGATGAGAAGATTGATCCCGGAAGAAAGTGACCCCGAATACGGAAGCTTCATTGCTGATCCGCAAAAGTATTTCCTCAATGCATTGCCTAGTTTGTTGCAGGCTACTAAGTATATGGCCGTTGTCGATACACTTTCAACTCATTCTATCGACGAAGAGTATATAGGCGAGAGACAACATTCTTCGACTTGGAGCGGTGATGCGGAGATTGTTGAGAAGTTTTACGAATTTTCAGCTGAAATTGGAAGGATTGAGAAGGTGATCGATAGTCGGAATCGTGATAAGACTTTGAGGAACCGTTGCGGCGCGGGTGTTTTGCCTTATGAATTACTTGCTCCTAGTTCTGAACCTGGTGTTACATGCAGAGGTGTCCCAAATAGTGTGTCTACATAA 2778 0.4078 MALTNEFLGSSLVERSLFPSSSPCFQQKNGRFLIKPVLVPFGNRRVLKLRKSAKFPVAALSEDLVKNSSSSLSSPSSSLPSEKPVKFKVRAVVTVRNKIKEDFKDTIAKHLDALTDRIGRNVVLELFSTEIDPKTNAAKKTNEAVLKDWAKKTNIKAERVNYIAEFTVDSNFGEPGAITVINNHQQEFFLENITIEGFATGAVHFPCNSWVQARKDLPGKRIFFSNKAYLPDDTPAGLTVLRKKDLKNLRGDGKGVRKLSDRIYDYDTYNDLGNPDKGIDLCRPNLGGSEMYPYPRRCRTGREPTDTDIRAESRVEKPLPMYVPRDERFEELKQNTFSVKRLKGVLHNLLPGLKSSLSADNQDFNDFSDVDGLYSVGLLIKLGLQDDVLKKFPLPKIVGKIKESTSQGVLKYDIPKIISKDKFAWLRDDEFGRQAIAGVNPVTIEKLQVFPPVSKLDPEIYGPLESALREEHILHQLNGMTVQQAIDENKLFIIDYHDIYLPFLERINALDGRKSYATRTIYYLTPLGTLKPIAIELSLPPSGPNTRSKRVVTPALDATTNWMWMLAKAHVCSNDAGVHQLANHWLRTHACTEPFILSAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISSEGVIESCFTPGRYAMEISSAAYKTFWRFDKDSLPQDLLRRGMAVPDPTKPHGIRLIMNDYPYAEDGLLIWSAIENWVRTYVNYYYPNPSLIINDRELQAWYSEAINVGHADVKDETWWPKLNDSDNLVSVLTILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEESDPEYGSFIADPQKYFLNALPSLLQATKYMAVVDTLSTHSIDEEYIGERQHSSTWSGDAEIVEKFYEFSAEIGRIEKVIDSRNRDKTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3910 925 ProSitePatterns Lipoxygenases iron-binding region signature 1. 579 593 IPR020833 GO:0016702|GO:0046872
Psa4g3910 925 ProSiteProfiles PLAT domain profile. 103 225 IPR001024 GO:0005515
Psa4g3910 925 Gene3D PLAT/LH2 domain 74 229 - -
Psa4g3910 925 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 87 229 IPR036392 GO:0005515
Psa4g3910 925 Pfam Lipoxygenase 238 908 IPR013819 GO:0016702|GO:0046872
Psa4g3910 925 Gene3D - 423 556 - -
Psa4g3910 925 Gene3D - 333 422 IPR027433 -
Psa4g3910 925 Gene3D - 558 924 - -
Psa4g3910 925 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 41 924 - -
Psa4g3910 925 PANTHER LIPOXYGENASE 41 924 IPR000907 GO:0016702|GO:0046872
Psa4g3910 925 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 228 925 IPR013819 GO:0016702|GO:0046872
Psa4g3910 925 Pfam PLAT/LH2 domain 140 224 IPR001024 GO:0005515
Psa4g3910 925 PRINTS Plant lipoxygenase signature 195 213 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 221 242 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 260 276 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 293 312 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 361 382 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 410 426 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 449 468 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 516 540 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Plant lipoxygenase signature 837 851 IPR001246 GO:0016491
Psa4g3910 925 PRINTS Lipoxygenase signature 561 578 IPR013819 GO:0016702|GO:0046872
Psa4g3910 925 PRINTS Lipoxygenase signature 579 596 IPR013819 GO:0016702|GO:0046872
Psa4g3910 925 PRINTS Lipoxygenase signature 599 619 IPR013819 GO:0016702|GO:0046872
Psa4g3910 925 CDD PLAT_LH2 87 226 IPR042057 -
Psa4g3910 925 ProSitePatterns Lipoxygenases iron-binding region signature 2. 606 616 IPR020834 GO:0016702|GO:0046872
Psa4g3910 925 SUPERFAMILY Lipoxigenase 230 924 IPR036226 -
Psa4g3910 925 SMART LH2_4 87 226 IPR001024 GO:0005515
Psa4g3910 925 Gene3D - 230 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3910 Psa-Chr4 326440023 326446452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3910 1 924 Acyl Lipid Metabolism Gene Families AT1G17420 69.322 0.0 1351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3910 K00454 - gmx:100793614 1538.47