Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3887 ATGTCTTGGGCAGGTCCTGAGGATATCTACCTTTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTAAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTCGCTAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTATATTGTGATATCCCTCTAGGTCTTTATGTAATCCGTGGAGAGAATGTTGTTCTAATTGGTGAGATGGACTTGGAGAGGGAGGAACTTCCCCCACATATGACGCGCGTTCCAACAGAAGAAATTAGGAGGGCACAGAAAGTAGAAAGGGATGCTTCAGATCTGAAAGGGACTATGAGAAAAAGAATGGAGTTCCTTGACTTGGATTAG 387 0.4289 MSWAGPEDIYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDLEREELPPHMTRVPTEEIRRAQKVERDASDLKGTMRKRMEFLDLD* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3887 128 CDD LSm1 12 82 IPR034104 GO:0000956
Psa4g3887 128 PANTHER LSM1 2 127 IPR044642 -
Psa4g3887 128 Gene3D - 12 125 - -
Psa4g3887 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 2 127 - -
Psa4g3887 128 SMART Sm3 13 81 IPR001163 -
Psa4g3887 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Psa4g3887 128 Pfam LSM domain 14 80 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3887 Psa-Chr4 325001785 325006430 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3887 K12620 - rcu:8279030 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3887 4 325001785 325006430 Psa4g3887 4 325001785 325006430 ECH