Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3808 ATGGTGGTAGCTGCTGGCTCCAAGTTCAATTTGAGAAGAGGGAACAGTGGTTCTTGTTCTTCTCATAATGTTGTTATTAATGACTATAATAATAATAATAACTGTGATGGAGAATTTTCTAGAATTAATAAAAGTGGTTGTTTTTCATCAATGGTGGATGTTGTTGATAAAGACTCTTCTTGTGTTTCATTCACTACTTTTAATATCCTCGCTCCTATTTACAAACGGATTGATCCACAGAATCAAGGACTTAGAGAAAGTGATTTCAGATCATTTTGGTTGGCTAGGAATCAAAGGATTCTTGATTCATTGCTTTCCGAGTCATCTTCTATCATGTGCCTACAGGAATTTTGGGTTGGAAGTGAAGAACTAGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGCTACCAACTCATCAAGCTTGCTCGAACCAACAACCGTGGAGATGGTCTGCTGACTGCTATTCACAAAGAACATTTAAGTGTCATAAATTATCGAGAATTGCTTTTCAATGATTGCGGTGACCGTGTTGCTCAGTTGTTACATGTTCAATCAGTTAATCCCATTTTACAAAACCAAAAAGACAGTGTTCACCAAGAGTTTCTGATTGTGAATACACACTTGCTTTTTCCTCATGATTCAAGTCTGTCTATAGTGAGATTGGATCAGGTTTATCAAATATTACAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCGCTGCCTATTATTCTATGCGGCGATTGGAACGGAAGCAAGCGTGGACATGTTTACAAATTCCTTAGGTCGCAGGGTTTCGTATCATCATATGATATTGCAAATCAATATACTGATAGTTTTGCAGATGCACACAAGTGGGTTAGTCACAGAAATCATAGAGGAAATATATGTGGTGTTGACTTCATTTGGCTCTGTAATCCTAACCAAACGCGTAAACCCTTGAAAACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAGTTCCAGCTTCGGAAGGTATTATTATCTGAAGATGACGCATTTACCTTTTTGAAAGGCGACAACTGTGCTGATTCTGTTAAAGCATTTACCTTTTTGAAGGGCAACAACTGTGTTGATGCTGTTACGTATGTTAGGTTTTCTGAAGCACTCCACCAGGTTAAGTTAATTGGTGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGATCTATGGAATCAAGCTGATGTAGATGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCAAAAGATTTGGAATTCTACATGTTCAGAGCATATGTTGGAAAATATCAATGGATGCATGGAGAATTCTAATACTGGGCAGGAGCAAGAAGCCATTGGTTTTAAGGTGAAGAATGCAATGTTGTTTCCGCGTGAAATGGAGAAAGGACTTTGGCCTGAAGATTACTCTCTTTCTGATCATGCTAGGTTAACAGTTGTATTTTCACCGGCAAAGATGTCTCGCCCTTCATTATAA 1488 0.3831 MVVAAGSKFNLRRGNSGSCSSHNVVINDYNNNNNCDGEFSRINKSGCFSSMVDVVDKDSSCVSFTTFNILAPIYKRIDPQNQGLRESDFRSFWLARNQRILDSLLSESSSIMCLQEFWVGSEELVHMYEERLGDAGYQLIKLARTNNRGDGLLTAIHKEHLSVINYRELLFNDCGDRVAQLLHVQSVNPILQNQKDSVHQEFLIVNTHLLFPHDSSLSIVRLDQVYQILQYVELYQRENRLKPLPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYTDSFADAHKWVSHRNHRGNICGVDFIWLCNPNQTRKPLKTSWAEAVFSILKFQLRKVLLSEDDAFTFLKGDNCADSVKAFTFLKGNNCVDAVTYVRFSEALHQVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSTCSEHMLENINGCMENSNTGQEQEAIGFKVKNAMLFPREMEKGLWPEDYSLSDHARLTVVFSPAKMSRPSL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3808 495 SUPERFAMILY DNase I-like 57 291 IPR036691 -
Psa4g3808 495 SUPERFAMILY EF-hand 373 421 IPR011992 -
Psa4g3808 495 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Psa4g3808 495 Pfam Endonuclease/Exonuclease/phosphatase family 93 290 IPR005135 GO:0003824
Psa4g3808 495 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 357 492 - -
Psa4g3808 495 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 34 356 - -
Psa4g3808 495 Gene3D Endonuclease/exonuclease/phosphatase 47 344 IPR036691 -
Psa4g3808 495 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 356 - -
Psa4g3808 495 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 357 492 - -
Psa4g3808 495 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3808 Psa-Chr4 319969790 319973826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3808 127 490 EF-hand Containing Proteins AT1G02270 63.736 1.27e-167 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3808 - - gmx:100777138 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3808 4 319969790 319973826 Psa4g3808 4 319969790 319973826 ECH