Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3801 ATGGAACTCGACCTCCGTTCTTTCCTTCCCGACGACATCGACGCCGATGTCCACGTCACACATCACCGGACCGTCGACGAAATTCTCAACGACTGCGATTCATCTTCATCCTCATCATCACCCTCTCCTCCTTCCTCTCCTTCTCATCATCTCCCACTACCTCACAATAACAAACCCACCCAATTTCCTCAACCCGTACCCGTTTCAATTTCCCGGGTCAAACCCGATAAACCTCCCCGCCCCTTCTCTTCCTTATTCGGCCGTGTCACACCCAATGCTAAACCCGGTGCCGCCCTTGCTGCCGCTGCTGCAGCTTCTAGATCCGTTCCGACCCCGCATGCGGCGGCAATTATATCCCGGAGGAAGAGTTCCCAGTCGATCAGAACCGAATCGGATGATTCTGATAAAGGTAGTGATTTGGGAGAGAAAATTGAGTCTGTGGAAAGGAAAATTGAGAGTAGTGAGAGTGTTTCTTCTGTTGGTGATGAGGGTGAAATTGCAGCAATTGAAGTGAATGGTGCTGATATTCAGGTGAAGGATGATTCTCGTGTTGTGAGTGGGGAGAAAAGTGATTTAGATGAGTGTTCTGTTTCTCCTTCCTTGAACGATGTTGAAAATGGTCATGATCATGATCATGATCAGGGTTTGAATTTGAGTTATACGCCTTTTGATGTTGCCGATAATGATAATGATGATGGTTTTGGTGAAAAAACTAGTCTAGATTATAAGGGAGTTGAAGAAACAGAAGAAGAAATAGTAAACGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTAGTGTTAGTGATGGTTCTGTTGGAGGTATTGAGAATGAAGTTAGTGGTGGAGGTGATGATGATGATGGTGGTGGTGGTGATGATGATGGTAGTTCAATAGGTGATGTTTTTGAACTAGTAGAGGAGACACTTGAGGAATTGGAAAGTGTAAATCTTAGAAAGAAAAAATCCGAGTCCTTAAAGAAGCCACTTGATTTAGCAGAGGAATTGGAGAAAAAGAATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCAGCTGCGCAGCCAATGAGGCTTGAAGGCGTTCGGAGAGGGTCTATTACATTAGGATATTTTGATGTTGATGCTGATAATGCTATCACAAGGGCCATTTCATCGCACACATTCAGGCGTGATCATGGTTCTGCTCAAGTCTTGGTGGTTCATACTAATTTCATTGCAGTTGGAATGACAAAAGGGCTCATTGTTTTAGTGCCTAGTAAATATTCCATTCATCACGCGGATAATACAGACGGAAAGATGTTGATGCTTGGTATACAAGGTGATCGATCACACGCTCCAGTGACGTCTATGTCTTTCAATCAGCAAGGAGATCTTCTTTTAGCCGGTTATGGTGATGGCCATGTTACACTTTGGGATACACAGAAAGGGGTTGTAGTTAAAGTTATTAGTGGTGAGCATACAGCACCAGTGGTACATGCTTTTTTTCTAGGACAGGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACGGGTGATTGTAAGGGTCTGGTTCTCTTACATCATATCTCAGTGGTTGTTTTGATTAACAGGTTCAACTTCAAAACTCAGTGTCTTCTTGATGGGCAAAGAACGGGCTTGGTGCTATCAGCTTCACCACTCCTTTTAGACGAATTCGGTGGAGGTGCCTCATCTTATTCTCAGGGAAACACCACGGTCTCAACCAGCAGTATAAGTAGCATGGTCGGAGGTGTTGTCGGGGGTGATGCAGGTTGGAAACTCTTCAATGAAGCCTCTTCTCTGGCTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTCAGTCCTTCATTGGAAGTCTATGCTCAACTCTCTAGGCCAAATGGAATCCGGGAGGGTTCTATGCCATATACTGCATGGAAGCACATGCCACAAACATGTAGTTCTACTGAAGCTGTTGAAAGAGTTTCGTTGCTTGCAATTGCTTGGGAGCGGAAAGTTCAGGTTGCAAGATTGGTCAAATCAGAATTAAAAGTATATGGAGAATGGTCTCTTGACAGTGCGGCTATAGGTCTGGCATGGTTAGATGATCAGATGCTGGTAGTGCTCACTTCAACTGGACAGCTGAATTTATTTGCTAAAGATGGAACTGTGATTCATCAAACAAGTTTTGGTGTGATTCATCAAACAAATTTTGGTGTGGATGGTATTGGAGGAGAAGAACTACTTTCATATCATACTCACTTCATCAACATATATGGGAATCCTGAGAAAGCTTATCATAACTCCATAGCTGTAAGAGGAACTTCTGTTTATGTACTTGGTCCAACACATCTTGTTGTTTCTCGTCTTCTCCCTTGGAAAGAACGTATCTTGGTTTTGCGAAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTACGATGGCCATGCTCATGGGGTTGTTGATCTACCTAGAACCTTGGATGCTATACATGAGGCTATAATGCCCTTCTTGGAGGAGTTGCTTACATCTTATGTTGACGAAGTGTTCTCCTATATTTCAGTGGCTTTCTGCAACCAAATTGGAAAACCTGATCAATCCAATGATTCAAATAGTAGAAGTAATCCAGTACACTCTGAAATAAAGGAACAATACACCCGGGTTGGTGGAGTTGCTGTTGAGTTTTGCTGTCATATAAAACGGACAGACATCCTTTTTGATAAAATTTTCTCCAAGTTCGTGGATGTTCATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTAGTAGAGTATTATAGCACTAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTGCTTCACATGGATATTTCATCCTTGGATTTTAATCAGGTTGTTAGGTTATGCCGGGAGCATGGACTATATAGTGCTCTGGTGTATCTCTTTAATAAAGGATTAGATGATTTTAGAGCACCTCTTGAGGAGCTCTTTGCAGTTCTACAAAATAGCCAGAAGGAAAATGCTAAGGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGTTTTATAGGTCTTGCCTTTCCTCCAGGCCATGGAACTATTCCGCCTACGCGGTTGCCATCTCTTAGAAAAGAACTTGTAGAGTTTTTGTTAGAGGATTCCAGTGCTATGAGATCACGGACTGCTTCAGATTCCGTGTCAAAGCAGCCTTACCTGAATCTATATCTTCTCTTAGAGTTAGACACCGAAGCTACATTAGATGTCCTCCGATGTGCTCTCATGGAAGATGAAATTTCAAATTCCAGCTCATCTTCACTGGATTCAGCTGACAAAGCCATTGATGAAGAAACCAAAGAAAATAATAATGTTACTGAAACTGAAAATATTTTGGTTCAGAATACAGTGGATGCTCTTATTCAGATAACTGATATGAATGTTGCTCCATCGGATACAACCTCTAGTAGTGGTGATGACAGATTAACAAAAGAGTGGCTTTCAAATGGCAAAGGTTGTCTGTTTGAGTTCATTGCATATTATGTTGCTCGCCAAAGAGCTAAAGTTTCAAAGGGCATGCTTTGTCGAATATTGGAATATCTGACATTGGATAATCACTTTTTAGCTAATGTTTCTTCTCATAGTTCAACTCCAAAGAATAGAGAGAAGCAAGTGCTTGCACTTCTGGAAGTAGTTCCTGAGTCCGATTGGGATGTTCCATTTTTGCTAGACCTATGTGAGAGCGCCAAATATTATCAGGTTTGTGGTTTGATTCATTCCATCAGACATGAGTATGTGGCTGCATTGGATAGCTATATGAAGGATGTAGATGAGCCTGTTCATGCCTTCTCCTTTATCAATAAAGCATTCTCACAGTTGATTGGCAATGACCATGCTGCTATTCGATCAGCAGTCCTATCTCGAATTCCTGAATTGGTTGAACTAAGCAGGGAAGGTGCATTCCATATAGTTACCAGACATTTTACTGATGAAAGTTCCCATATCATCACTAAACTTCAGTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATCGAGCTTCATTTATTTGGCACCCTAGACTTGTCTAATTTGACAAAGGATGTTATTACAGACCCCCTTAATGGAAAGCAGGATAAGGATCTCCCACAAGGAATCCATGATTACTTAGAAAATATATCCGATTTCCCCAAGTATATGCGTGAAAATCCTAGTCATGTGCCTGATGATCTTATTGAGCTTTACCTAGAGCGGTTATGCCAGTATGAACGGGGTTCAGTTCTAAAGTTTCTAGAAATGTTTGATAGCTATCGTGTGGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTGTAGATGCTGCTGCTTTCTTATTGGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTGAATGATAAATTTGTTGAGCTTGATGCTGCCGTGGAAGCTGTAGTGTTAAACCATCCCAAGCTTGATTCTTCCCATATGGAAGTATTCAACACTGTTTTAAGAACAAAAGAGGTGAATGTCATGTATGATTTGTTGCATGCCTGTATCGGTCTGTGTCAGCGGAATACCCCTCGGCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTACATTACTTGACTCGTTTTGTGACCCATTGATGGATTCATATGTTGAAGAGAGAGCACATGAAAGAAAAAATTATTTTGGCGTACTAGCTGGATCAGCAGATTCACAACTGGACAAAGACACCTATAAAAGCAGTTGGAAGATTTCAAAGTCCCGAAATGGTGATCTCTTGAGAAAATTGTTATCTCAATTCATTAAAGAGATTGTTGAGGGAATGATAGGTTATGTTCACCTGCCAGCTATCATGTCCAAACTCTTGTCTGATAATGGTAGTCAAGAATTTGGATATTTTAAACTTACCATATTGGGGATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCGAAATCCTTGATAGAGGATGATACATTCTATACTATGAGTTTACTCAAGAAAGGAGCCTCCCATGGATTCGCTCCCAAGAGTTCAGTGTGCTGTATTTGTAATTGCCTCCTTACAAAGAACTCAGTCACCACCGGAATCAGAATTTTCAACTGTGGCCATGCAATTCATCTCCACTGTGAAGCCTCTGAAGTCGAGTCATCAAGCAAAGGATCTTCATCCGGATGCCCTGTATGCATGCCTAACCAAAAACCCCAGAAGTCTAGAAACAAATCAATCGTTACAGAGAATGGTTTGGTCAATAGATTCTCACCAAGGCACCAACACCCTCCTTATGGAAGTACGATTCATCATCATGACAGCGATTTATCAGAAAATATGTATGGAGGACAACAACAGATATCACGGTTTGAGATCTTGAGCAGCTTGCAGAAAAATCAAAGATTTATGCAATTCGAAAATTTGCCTCCATTGAGGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTAGCACACTATCAGACCGGAGAAAGTAGCAACAGTTCTGCAATTATAGAGAAAAATAGTCGTCACAAACAAAACCGGGAGCTGAGAGTTAGAGGTTCTTCGATTCGTTTTCCTTTGAAATCAAGTTTTTTTGGCAAGGAAAAGACGAATAAGCGATGA 5718 0.4176 MELDLRSFLPDDIDADVHVTHHRTVDEILNDCDSSSSSSSPSPPSSPSHHLPLPHNNKPTQFPQPVPVSISRVKPDKPPRPFSSLFGRVTPNAKPGAALAAAAAASRSVPTPHAAAIISRRKSSQSIRTESDDSDKGSDLGEKIESVERKIESSESVSSVGDEGEIAAIEVNGADIQVKDDSRVVSGEKSDLDECSVSPSLNDVENGHDHDHDQGLNLSYTPFDVADNDNDDGFGEKTSLDYKGVEETEEEIVNGVGVGVGVGVGVGVSVSDGSVGGIENEVSGGGDDDDGGGGDDDGSSIGDVFELVEETLEELESVNLRKKKSESLKKPLDLAEELEKKNASTGLHLEEGAAAQPMRLEGVRRGSITLGYFDVDADNAITRAISSHTFRRDHGSAQVLVVHTNFIAVGMTKGLIVLVPSKYSIHHADNTDGKMLMLGIQGDRSHAPVTSMSFNQQGDLLLAGYGDGHVTLWDTQKGVVVKVISGEHTAPVVHAFFLGQDPQNTRQFKAVTGDCKGLVLLHHISVVVLINRFNFKTQCLLDGQRTGLVLSASPLLLDEFGGGASSYSQGNTTVSTSSISSMVGGVVGGDAGWKLFNEASSLAEEGVVVFVTHQTALVVRLSPSLEVYAQLSRPNGIREGSMPYTAWKHMPQTCSSTEAVERVSLLAIAWERKVQVARLVKSELKVYGEWSLDSAAIGLAWLDDQMLVVLTSTGQLNLFAKDGTVIHQTSFGVIHQTNFGVDGIGGEELLSYHTHFINIYGNPEKAYHNSIAVRGTSVYVLGPTHLVVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAIHEAIMPFLEELLTSYVDEVFSYISVAFCNQIGKPDQSNDSNSRSNPVHSEIKEQYTRVGGVAVEFCCHIKRTDILFDKIFSKFVDVHVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSQKENAKALGYRMLVYLKYCFIGLAFPPGHGTIPPTRLPSLRKELVEFLLEDSSAMRSRTASDSVSKQPYLNLYLLLELDTEATLDVLRCALMEDEISNSSSSSLDSADKAIDEETKENNNVTETENILVQNTVDALIQITDMNVAPSDTTSSSGDDRLTKEWLSNGKGCLFEFIAYYVARQRAKVSKGMLCRILEYLTLDNHFLANVSSHSSTPKNREKQVLALLEVVPESDWDVPFLLDLCESAKYYQVCGLIHSIRHEYVAALDSYMKDVDEPVHAFSFINKAFSQLIGNDHAAIRSAVLSRIPELVELSREGAFHIVTRHFTDESSHIITKLQSHPRSLFLYLKTLIELHLFGTLDLSNLTKDVITDPLNGKQDKDLPQGIHDYLENISDFPKYMRENPSHVPDDLIELYLERLCQYERGSVLKFLEMFDSYRVEHCLRLCQEYGIVDAAAFLLERVGDVGSALSLTLSDLNDKFVELDAAVEAVVLNHPKLDSSHMEVFNTVLRTKEVNVMYDLLHACIGLCQRNTPRLNPEESEAHWFTLLDSFCDPLMDSYVEERAHERKNYFGVLAGSADSQLDKDTYKSSWKISKSRNGDLLRKLLSQFIKEIVEGMIGYVHLPAIMSKLLSDNGSQEFGYFKLTILGMLGTYGFERRILDAAKSLIEDDTFYTMSLLKKGASHGFAPKSSVCCICNCLLTKNSVTTGIRIFNCGHAIHLHCEASEVESSSKGSSSGCPVCMPNQKPQKSRNKSIVTENGLVNRFSPRHQHPPYGSTIHHHDSDLSENMYGGQQQISRFEILSSLQKNQRFMQFENLPPLRLAPPAVYHEKVSKVAHYQTGESSNSSAIIEKNSRHKQNRELRVRGSSIRFPLKSSFFGKEKTNKR* 1906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3801 1905 Gene3D - 369 522 IPR015943 GO:0005515
Psa4g3801 1905 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1373 1533 IPR000547 GO:0006886|GO:0016192
Psa4g3801 1905 MobiDBLite consensus disorder prediction 104 164 - -
Psa4g3801 1905 ProSiteProfiles Zinc finger RING-type profile. 1712 1760 IPR001841 -
Psa4g3801 1905 PANTHER - 300 1833 - -
Psa4g3801 1905 MobiDBLite consensus disorder prediction 51 67 - -
Psa4g3801 1905 Pfam Region in Clathrin and VPS 1399 1498 IPR000547 GO:0006886|GO:0016192
Psa4g3801 1905 SUPERFAMILY RING/U-box 1705 1766 - -
Psa4g3801 1905 Coils Coil 1125 1145 - -
Psa4g3801 1905 MobiDBLite consensus disorder prediction 1857 1871 - -
Psa4g3801 1905 SUPERFAMILY WD40 repeat-like 431 726 IPR036322 GO:0005515
Psa4g3801 1905 CDD RING-H2 1712 1761 - -
Psa4g3801 1905 MobiDBLite consensus disorder prediction 31 78 - -
Psa4g3801 1905 PANTHER VACUOLAR PROTEIN SORTING VPS41 300 1833 IPR045111 GO:0006623
Psa4g3801 1905 MobiDBLite consensus disorder prediction 125 156 - -
Psa4g3801 1905 MobiDBLite consensus disorder prediction 1857 1884 - -
Psa4g3801 1905 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Psa4g3801 1905 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 483 IPR001680 GO:0005515
Psa4g3801 1905 Coils Coil 308 328 - -
Psa4g3801 1905 Pfam Golgi CORVET complex core vacuolar protein 8 928 1111 IPR025941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3801 Psa-Chr4 319694387 319705215 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3801 K20178 - gmx:100785710 2647.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3801 4 319694387 319705215 Psa4g3801 4 319694387 319705215 ECH