Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3783 ATGATGAACCAAGTGAAGCAAATTCATGGTTACACATTAAGAAAAGGCATAGACAACACCAAAATCCTCATTGAAAAGCTACTTGAAATCCCAAACCTAAACTATGCTCAACTAGTTTTGCACCATTCCCAAAAACCAACCGTTTTTCTCTACAACAAACTCATTCAAGCTCACTCCTTTAAACACCAACACCAATGTTTTTCCCTTTACTCCCAAATGCTCCTTCATGGCCACTCACCAAATCAATACACTTTCAACTTCCTTTTCTCTGCATGTACCTCCATTGGTTCTCTTTCCCTTGGCCAAATGATGCATACCCAGTTCATCAAATCAGGTTTTCAACCTGATGTGTTTGCTTCCACGGCTTTGCTTGATATGTATGCTAAATTGGGTGGTTTGAAGCTTGCACGTAATGTGTTTGATGAAATGCTTGTGAGGGAGTTACCCACTTGGAATGCTATGATGGCTGGGCATTCGAGGGATGGTGATATGGAAAGTGCGTTGGAGTTGTTTTGGTTGATGCCTTCTAGGAATGTGGTGTCGTGGACCACTATGGTGTCGGGTTACTCGCAGAATAAACAGTATGAAAAAGCTTTGGGGTTGTTTCTGAGGATGGAAAGGGAGAAGAATATAATTCCTAATGAAGTGACCTTGGCAAGCGTTTTGCCGGCTTGCTCGAATCTTGGGGCACTTGAAATTGGGCAGAGGGTTGAAGCGTATGCGAGGAAAAATGGGTTTTTTAAGAATTTGTTTGTAAGTAATGCTGTATTGGAGATGTATGCGAAGTGTGGGAAGATTGATGTTGCTTGGAAGGTGTTTGATGAGATAGGTGGATTCAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGAGAATGTCACAAGGCCATTGAGCTTTATGATCAAATGCTGAGAGAAGGAACTTTGCCAGATGACGTGACATTCGTGGGGCTTCTCTTGGCATGCACGCATGGAGGCATGGTTGAAAAGGGCAAGCATATATTCCAGTCAATGACAGGAGACTTCAATATTGTTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTCCTAGGCCGTGCAGGGCGATTAACGGAAGCTTATGAGGTCATACAGACTATGCCAATGAAGCCAGACTCGGTAATATGGGGTGCTTTGTTGGGGGCTTGCAGTTTCCATGGTAATGTTGAACTGGCTGAAATAGCAGCCGAGTCTTTATTTGTACTTGAGCCTGGGAATCCGGGAAATTACGTCATTCTTTCGAACATTTATGCATCATCTGGCCAATGGGATGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGAAGCAAGATTACAAAGACAGCTGGACATAGCTTCATCGAAGAGGGAGGTCAACTGCATAAGTTCATTGTGGAGGATAGATCCCATTCAGAAAGTAGCGAAATTTTTGCTTTGCTAAATGGAGTTTATGAAATGATAAAGTTTAATAGAAATGAACATGAATGCCATTTTGATTTTGATTTGATCAAACATTCATAG 1536 0.4238 MMNQVKQIHGYTLRKGIDNTKILIEKLLEIPNLNYAQLVLHHSQKPTVFLYNKLIQAHSFKHQHQCFSLYSQMLLHGHSPNQYTFNFLFSACTSIGSLSLGQMMHTQFIKSGFQPDVFASTALLDMYAKLGGLKLARNVFDEMLVRELPTWNAMMAGHSRDGDMESALELFWLMPSRNVVSWTTMVSGYSQNKQYEKALGLFLRMEREKNIIPNEVTLASVLPACSNLGALEIGQRVEAYARKNGFFKNLFVSNAVLEMYAKCGKIDVAWKVFDEIGGFRNLCSWNSMIMGLAVHGECHKAIELYDQMLREGTLPDDVTFVGLLLACTHGGMVEKGKHIFQSMTGDFNIVPKLEHYGCMVDLLGRAGRLTEAYEVIQTMPMKPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPGNPGNYVILSNIYASSGQWDGVAKLRKVMKGSKITKTAGHSFIEEGGQLHKFIVEDRSHSESSEIFALLNGVYEMIKFNRNEHECHFDFDLIKHS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3783 511 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 460 - -
Psa4g3783 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 213 IPR002885 -
Psa4g3783 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 177 IPR002885 -
Psa4g3783 511 Gene3D Tetratricopeptide repeat domain 208 481 IPR011990 GO:0005515
Psa4g3783 511 Gene3D Tetratricopeptide repeat domain 32 207 IPR011990 GO:0005515
Psa4g3783 511 Pfam PPR repeat 254 276 IPR002885 -
Psa4g3783 511 Pfam PPR repeat 355 380 IPR002885 -
Psa4g3783 511 Pfam Pentatricopeptide repeat domain 111 143 IPR002885 -
Psa4g3783 511 Pfam E motif 398 460 IPR046848 -
Psa4g3783 511 PANTHER OS06G0125600 PROTEIN 3 460 - -
Psa4g3783 511 Pfam PPR repeat family 46 92 IPR002885 -
Psa4g3783 511 Pfam PPR repeat family 177 225 IPR002885 -
Psa4g3783 511 Pfam PPR repeat family 281 327 IPR002885 -
Psa4g3783 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Psa4g3783 511 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Psa4g3783 511 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Psa4g3783 511 TIGRFAM PPR: pentatricopeptide repeat domain 180 215 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3783 Psa-Chr4 316949532 316951337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3783 6 510 Glycoside Hydrolase AT3G49170 32.946 3.99e-90 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3783 - - gmx:100790321 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3783 4 316949532 316951337 Psa4g3783 4 316949532 316951337 ECH