Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3766 ATGACAGGGTTAACAGTGAAACCCCCACCTCAAATGCAATCATTTGGAATTTTGCTCCGTGAACCACCGCAAAATGAGGTCACCAACGGTGAAAACCACCGGAACCCATCACCGGTGATGAAGAAAACAATCAAAAAGACACTGATCATGGATGAATCATCGCTAGAAAACCCTGATTTGGGTCCGTTTCTTCTGAAGATGGCACGAGATACCATAGCTTCTGGTGAGAATCCAGGTAAGGCTTTGGATTATGCAATTCGGGCATCCAAATCCTTTGAACGGGTTTCGGGTCAGGGTGTGGATCTTGCCACGTGTCTGCATGTTGTTGCTGCGATTTATTGTAGTTTGGGGAAGTTGGATGAGGCTATTGAGGAATTGGAACGGTCAATTCTGTTGTTGGATGTTGAAAATGGGTCGGGTCATGGTATGGTGAAATTTTCTGGGTATATGCAACTTGGTGATACTTATTCTATGACTGGACGGTTGGATAGATCCATTTTGTGTTATGAGTCGGGTTTGAAGATCCAAATGGGTATTTTGGGTAAGTCTGACCCGAGAGTTGCAGAAACATGCAGATACTTAGCTGAAGCTCATGTTCAAGCCATGCAATTCGACGACGCGGAGCACTTCTGCAAGAAGACACTTGAAATTCATAAGGAGCATTGCTCACCCGCTTCCCTCACCGAAGCAGCTGACAGGCGTCTCATGGCCCTTATCTGCGAAGCAAAGGGAGATTACGAACCAGCACTCGAGCATCTTGTCCTAGCCAGCATGTCAATGATTGCTAATGGACAGGATAACGAGGTTGCAGCTATTGATGTTAGCATCGGGGATATTTACTTGTCGCTGTGTCGTTTTGACGAAGCCGTTTTCTCCTATCAGAAAGCACTGACAGTGTTCAAATCCACCAAGGGTGAAAACCACAGTTCTGTTGCCTTAGTGTTCATCCGTCTCGCGGATCTTTACTTCAAGACTGGGAAATTAAGAGAGTCAACGTCTTATTGTGAAAACGCATTGAGAATATATAGTAAGCCCTTGCCTGGAATAACCACCGGAGAGATTGCGAGTGGCTTGACCGAAATCTCGGCAATCTACGAAGCTCTAAACGAACCCGAGGACGCGTTGAAGCTCTTGCAGAAGGCGGTGAAACTATTAGACGGTATCCCCGGACAATATAGGACAGTTGCGGGAATAGAAGCTCAAATGGGAGTACTGTTCTACATGGTCGGGCGGAATGTGGAAGCTTGGAAATCTTTTGATAACGCTGTCATCAAGCTGAGAGCCGGCGGGGAGAGGAAATCTGCGTTTTTCGGATTCGTGTTGAACCAGATGGGCTTGGTGTGTGTTCAACTCTATAAAATAGAAGAAGCTGCTACACATTTTGAAGAAGCTAGAGAGATACTGGAGAGGGAATGTGGAAACTATCATTTGGACACTCTTGGAGTGTATAGCAACCTAGCTGCAACTTATGATGCATTAGGAAGAGTTGAAGATGCGATTCGAATATTGGAATACATACTGAAAATGCGAGAAGAAAAACTTGGAACTGCGAATCCAGATGTTGATGAAGAAAAGAAAAGACTGTTTGAGCTTTTGAAAGAAGCGGGAAGAGTTCGAAGTAGAAAGGGAAAATCTCTCGAAAACCTTATCGATTCAAACTCGTTGAAGATGAAGAAGGAAGGAAGAAGGAAATGGGGTGCATTTAGTTTTAGAACTTAA 1719 0.4468 MTGLTVKPPPQMQSFGILLREPPQNEVTNGENHRNPSPVMKKTIKKTLIMDESSLENPDLGPFLLKMARDTIASGENPGKALDYAIRASKSFERVSGQGVDLATCLHVVAAIYCSLGKLDEAIEELERSILLLDVENGSGHGMVKFSGYMQLGDTYSMTGRLDRSILCYESGLKIQMGILGKSDPRVAETCRYLAEAHVQAMQFDDAEHFCKKTLEIHKEHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFSYQKALTVFKSTKGENHSSVALVFIRLADLYFKTGKLRESTSYCENALRIYSKPLPGITTGEIASGLTEISAIYEALNEPEDALKLLQKAVKLLDGIPGQYRTVAGIEAQMGVLFYMVGRNVEAWKSFDNAVIKLRAGGERKSAFFGFVLNQMGLVCVQLYKIEEAATHFEEAREILERECGNYHLDTLGVYSNLAATYDALGRVEDAIRILEYILKMREEKLGTANPDVDEEKKRLFELLKEAGRVRSRKGKSLENLIDSNSLKMKKEGRRKWGAFSFRT* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3766 572 Gene3D Tetratricopeptide repeat domain 258 431 IPR011990 GO:0005515
Psa4g3766 572 SMART tpr_5 312 345 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 438 471 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 146 179 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 355 388 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 103 136 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 480 513 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 270 303 IPR019734 GO:0005515
Psa4g3766 572 SMART tpr_5 188 221 IPR019734 GO:0005515
Psa4g3766 572 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 27 572 - -
Psa4g3766 572 Coils Coil 116 136 - -
Psa4g3766 572 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 27 572 - -
Psa4g3766 572 ProSiteProfiles TPR repeat profile. 270 303 IPR019734 GO:0005515
Psa4g3766 572 Pfam Tetratricopeptide repeat 269 343 - -
Psa4g3766 572 Pfam Tetratricopeptide repeat 441 512 - -
Psa4g3766 572 Gene3D Tetratricopeptide repeat domain 65 257 IPR011990 GO:0005515
Psa4g3766 572 SUPERFAMILY TPR-like 104 517 IPR011990 GO:0005515
Psa4g3766 572 Pfam MalT-like TPR region 107 255 IPR041617 -
Psa4g3766 572 Gene3D Tetratricopeptide repeat domain 432 549 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3766 Psa-Chr4 316025521 316028836 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g3766 - - gmx:100794697 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3766 4 316025521 316028836 Psa4g3766 4 316025521 316028836 ECH